Browse Element(s) Details


Os.52542.1.S1_at

Description gb:AK067854.1
DB_XREF= gi:32977872
TID=Os.52542.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121H15, full insert sequence.
FL= gb:AK067854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g605201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60449NANA3+34310640..34311682hypothetical protein
LOC_Os03g60460Os.15432.1.S1_at10/113+34317091..34321293Peptidase family M1 containing protein, expressed
LOC_Os03g60470Os.53476.1.S1_at11/113+34321693..34323295expressed protein
LOC_Os03g60480Os.8144.1.S1_at11/113+34324835..34327108heavy metal-associated domain containing protein, expressed
LOC_Os03g60500OsAffx.28855.3.S1_x_at5/113+34330365..34332169hypothetical protein
LOC_Os03g60509Os.9929.1.S1_at11/113+34333429..34334598expressed protein
LOC_Os03g60520Os.52542.1.S1_at1/113+34336350..34339211expressed protein
LOC_Os03g60524Os.29987.1.S1_at6/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.43567.1.S1_x_at3/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.38172.1.S1_x_at2/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60530Os.9042.1.S1_at10/113+34346027..34349308Ras-related protein ARA-3, putative, expressed
LOC_Os03g60540OsAffx.13562.1.S1_at11/113+34349796..34350356Zinc finger, C2H2 type family protein
LOC_Os03g60550Os.17427.1.S1_at11/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60550OsAffx.25657.1.S1_s_at1/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60560Os.28441.1.S1_at11/113+34363114..34364034Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52542.1.S1_at--662--7551Chr03:34336428..34336452 (25 bp)
GTGGCCAGATTTATCGGATTGCATT
LOC_Os03g60520
Os.52542.1.S1_at--839--6331Chr03:34336350..34336374 (25 bp)
GATGCTTTTGGATCTGTTCAGTTAG
NONE
Os.52542.1.S1_at--577--9651Chr03:34336333..34336357 (25 bp)
TCAGTTAGGCTGTTGGCTGCTTTCA
NONE
Os.52542.1.S1_at--423--4891Chr03:34336315..34336339 (25 bp)
GCTTTCAGAGTTTCAGGTTTCCATG
NONE
Os.52542.1.S1_at--276--1011Chr03:34336301..34336325 (25 bp)
AGGTTTCCATGGCACAATACACTTG
NONE
Os.52542.1.S1_at--514--10371Chr03:34336252..34336276 (25 bp)
TTTTCTTAGGTACTTCTCAGCTTGT
NONE
Os.52542.1.S1_at--645--4931Chr03:34336233..34336257 (25 bp)
GCTTGTAATGTTTCTTCGTTGGTTC
NONE
Os.52542.1.S1_at--803--6051Chr03:34336158..34336182 (25 bp)
GAGTTTTTTAGTTGAGTCGCCGTGC
NONE
Os.52542.1.S1_at--641--8271Chr03:34336057..34336081 (25 bp)
GGCATCCCATAGGTTGTAAGTCTTT
NONE
Os.52542.1.S1_at--936--7531Chr03:34336010..34336034 (25 bp)
GTGGCTCTCTATTTGTTGGATTTTC
NONE
Os.52542.1.S1_at--135--1191Chr03:34335948..34335972 (25 bp)
AGTACCCTGCCAACATTTGTATTGT
NONE
Target Sequence 
GTGGCCAGATTTATCGGATTGCATTGACAGGGTAGGGAGGGATGTGGAGAACATGATAAAAGATGATCTTTTGGAAGAGA
TGCTTTTGGATCTGTTCAGTTAGGCTGTTGGCTGCTTTCAGAGTTTCAGGTTTCCATGGCACAATACACTTGCTTCCCCC
TTATTTAGTTTTTGATTTTTCTTAGGTACTTCTCAGCTTGTAATGTTTCTTCGTTGGTTCATAAGGTCAAAAGTTTTTTT
TTTTTTTTGGTTTGTTGAAGCAGTGGTTGACGAGTTTTTTAGTTGAGTCGCCGTGCTTGAGGTATAGAGCAAGTTGTAAA
TTTTGTTAGTTTAGATCAGGTCCGTAGATTAAATTCTTTTAGAACGAGAAAGGGCATCCCATAGGTTGTAAGTCTTTGGC
GGAATGTATAAGGAGTATAGTGGCTCTCTATTTGTTGGATTTTCTCAGTTGAAGGCATTTAAGTCTGTAAATCGGGGAAA
TAGTACCCTGCCAACATTTGTATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis