Browse Element(s) Details


Os.52543.1.S1_at

Description gb:AK067855.1
DB_XREF= gi:32977873
TID=Os.52543.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52543 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121P15, full insert sequence.
FL= gb:AK067855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g535809/11p21-rho-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53550OsAffx.4167.1.S1_at9/114+31706594..31709535Cytochrome c biogenesis ATP-binding export protein ccmA, putative
LOC_Os04g53560OsAffx.4168.1.S1_s_at11/114+31713539..31714647expressed protein
LOC_Os04g53580Os.52543.1.S1_at9/114+31718401..31720127p21-rho-binding domain-containing protein, putative, expressed
LOC_Os04g53590OsAffx.22848.4.S1_at2/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53590OsAffx.22848.4.S1_x_at1/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53600OsAffx.4169.1.S1_at11/114+31737145..31738486hypothetical protein
LOC_Os04g53606OsAffx.26671.1.S1_x_at11/114+31738650..31739569expressed protein
LOC_Os04g53606Os.55628.1.S1_at11/114+31738650..31739569expressed protein
LOC_Os04g53612Os.52009.1.S1_at11/114+31740539..31742815expressed protein
LOC_Os04g53612OsAffx.25647.1.S1_x_at2/114+31740539..31742815expressed protein
LOC_Os04g53620Os.4415.1.S1_at11/114+31743479..31746140polyubiquitin containing 7 ubiquitin monomers, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000902biological_processcellular morphogenesis
GO:0009860biological_processpollen tube growth
GO:0010215biological_processcellulose microfibril organization
GO:0031122biological_processcytoplasmic microtubule organization and biogenesis
GO:0005737cellular_componentcytoplasm
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0016324cellular_componentapical plasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52543.1.S1_at--1114--8131Chr04:31718826..31718850 (25 bp)
GGACAGCATCAGCAATCGGCCATGT
LOC_Os04g53580
Os.52543.1.S1_at--131--771Chr04:31718805..31718829 (25 bp)
ATGTCGATCCTAATGTCTTCTTGGC
LOC_Os04g53580
Os.52543.1.S1_at--797--10871Chr04:31718785..31718809 (25 bp)
TTGGCACTCACATGCTGATCTGCTT
LOC_Os04g53580
Os.52543.1.S1_at--249--8851Chr04:31718770..31718794 (25 bp)
TGATCTGCTTCCACTGTTGGGACAG
LOC_Os04g53580
Os.52543.1.S1_at--371--6631Chr04:31718755..31718779 (25 bp)
GTTGGGACAGATTTCGACCAGCCTC
LOC_Os04g53580
Os.52543.1.S1_at--6--2871Chr04:31718489..31718513 (25 bp)
AAGTGCAGCACTGATCGAATTTCCG
LOC_Os04g53580
Os.52543.1.S1_at--569--4771Chr04:31718473..31718497 (25 bp)
GAATTTCCGGGTGTGCTACTGCTAC
LOC_Os04g53580
Os.52543.1.S1_at--349--1131Chr04:31718438..31718462 (25 bp)
AGTGCTGTACATCGTTGTCTGTTCA
LOC_Os04g53580
Os.52543.1.S1_at--277--4891Chr04:31718404..31718428 (25 bp)
GCTTTGCGCCAACTGTACATGTAAA
LOC_Os04g53580
Os.52543.1.S1_at--851--9731Chr04:31718354..31718378 (25 bp)
TAATCGGCGATCGTACGGAGAAATT
NONE
Os.52543.1.S1_at--214--791Chr04:31718326..31718350 (25 bp)
ATGTGATCGCCGTTTGTGTGTTTGA
NONE
Target Sequence 
GGACAGCATCAGCAATCGGCCATGTCGATCCTAATGTCTTCTTGGCACTCACATGCTGATCTGCTTCCACTGTTGGGACA
GATTTCGACCAGCCTCGAGACTCGTCGTCCTTCGCCACGCCGTCAGAGAACACCAGCCTGCAGCAGCAAGAAGCGGCGCC
GCCTCCTGACATACCACGCCCGCCGGCGGCGAGGAAGACGAGGCGGAAGCGGAGGTCCACGAGCGACTGCCCGGTGCCTT
CTTCTTCTTCTTCGGCGAGACCCAGCTGCGATTCCACCATGGCGCCTGCTTCCGACGCCAATGCGTCGCAAGATCAAAAC
TGCAACTCTGCAACGTGAAGTGCAGCACTGATCGAATTTCCGGGTGTGCTACTGCTACTTGCGCAGAGAGTGCTGTACAT
CGTTGTCTGTTCAGTGCTCTCTGCTTTGCGCCAACTGTACATGTAAATGGGTTTGGAGTTTGGAGTGCAGATTAATCGGC
GATCGTACGGAGAAATTGGAATGTGATCGCCGTTTGTGTGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis