Browse Element(s) Details


Os.52575.1.S1_x_at

Description gb:AK068103.1
DB_XREF= gi:32978121
TID=Os.52575.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129K12, full insert sequence.
FL= gb:AK068103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2393010/11expressed protein
LOC_Os02g541504/11SacI homology domain containing protein, expressed
LOC_Os08g155903/11hypothetical protein
LOC_Os10g292742/11expressed protein
LOC_Os08g330001/11hypothetical protein
LOC_Os10g102801/11hypothetical protein
LOC_Os10g407901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23880Os.9729.2.S1_at11/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.5420.1.S1_x_at10/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.799.1.S1_at1/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23890OsAffx.5421.1.S1_at11/117+13507791..13509083F-box domain containing protein
LOC_Os07g23900Os.53238.1.S1_at11/117+13511942..13514082F-box domain containing protein, expressed
LOC_Os07g23910NANA7+13515302..13515514hypothetical protein
LOC_Os07g23920Os.47463.1.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23920Os.14491.2.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23930Os.52575.1.S1_x_at10/117+13523440..13531197expressed protein
LOC_Os07g23930Os.46319.1.S1_s_at4/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.30371.1.S1_at2/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.5828.1.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23930Os.26733.2.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23944Os.50392.1.S1_at11/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_x_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.11458.1.S1_s_at1/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23960OsAffx.28561.1.S1_at11/117+13554489..13556567Transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0003777molecular_functionmicrotubule motor activity
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52575.1.S1_x_at--724--10471Chr07:13525073..13525097 (25 bp)
TTAAAAGTGGCGTTCCGTGCTCTGA
LOC_Os07g23930
Os.52575.1.S1_x_at--1096--10652Chr02:33188450..33188474 (25 bp)
TTCCGTGCTCTGAGGTTGACTGAGT
LOC_Os02g54150
Os.52575.1.S1_x_at--410--10252Chr02:33188437..33188457 (21 bp)
TTTGAAAGTGGCGTTCCGTGCACCA
LOC_Os02g54150
Os.52575.1.S1_x_at--250--9031NONE
TGCACCACCTACCAGTACAATAAAA
NONE
Os.52575.1.S1_x_at--212--8973Chr10:14901204..14901228 (25 bp)
TGAAAGCAACACATCCATATCTGGA
LOC_Os10g29274
Os.52575.1.S1_x_at--1079--6651Chr07:13523977..13524001 (25 bp)
GTTGAATGCAACACCGCTTGATGTT
LOC_Os07g23930
Os.52575.1.S1_x_at--38--10193Chr10:21585221..21585240 (20 bp)
TATACACACCCATGGTACCTCAGAT
LOC_Os10g40790
Os.52575.1.S1_x_at--255--5292Chr02:33191185..33191209 (25 bp)
GAATGGCTTTCAACTTCAGGCAACT
LOC_Os02g54150
Os.52575.1.S1_x_at--204--1054Chr10:14900774..14900798 (25 bp)
AGGTGTTTACTTTTGCATTGCTATT
LOC_Os10g29274
Os.52575.1.S1_x_at--382--5231Chr07:13523532..13523556 (25 bp)
GAATATCATCTTCATAGTGGCAGTC
LOC_Os07g23930
Os.52575.1.S1_x_at--794--6274Chr08:20344815..20344921 (25 bp)
GATGTACACATTTTCTTTGCCTTAG
LOC_Os08g33000
Target Sequence 
TTAAAAGTGGCGTTCCGTGCTCTGAGGTTGACTGAGTTCTATAGTGTGCTTGATGTTCTTTTGAAAGTGGCGTTCCGTGC
ACCACCTACCAGTACAATAAAAAGAGAGATATCATATGGCAGCATTCTTTGTGAAAGCAACACATCCATATCTGGATGTA
GTGGTTGCCATAATGAAGACGTCAGTTGTTGAATGCAACACCGCTTGATGTTAAAAGTGGGTCACAATTTCCAGTATTGG
AATCTGGTTCAGTACATGGCAATGAAATTTCATTGACTTGTGAAAGTGAGGTATCAAACTTAAGGTATACACACCCATGG
TACCTCAGATACATCATGTTCCAGGCATTGAAACTGAAAGTTGCATTCATTCAAGTGATTCAAACAATGGATCTTGAATG
GCTTTCAACTTCAGGCAACTTAAGCGATGAAAGGTGTTTACTTTTGCATTGCTATTGTATTTTTTTTAGCGTTTTCGACT
GATAGAATATCATCTTCATAGTGGCAGTCAATTTGATGTACACATTTTCTTTGCCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52575.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis