Browse Element(s) Details


Os.52693.1.S1_at

Description gb:AK068793.1
DB_XREF= gi:32978818
TID=Os.52693.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013164F23, full insert sequence.
FL= gb:AK068793.1 gb:AK105606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4403011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43980NANA4+25845502..25851463retrotransposon protein, putative, unclassified
LOC_Os04g43990Os.5467.1.S1_at11/114+25855615..25856780expressed protein
LOC_Os04g44000NANA4+25860485..25865227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44010Os.14491.2.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44010Os.47463.1.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44020Os.57352.1.S1_at2/114+25868330..25868703expressed protein
LOC_Os04g44030Os.52693.1.S1_at11/114+25871571..25874685expressed protein
LOC_Os04g44050OsAffx.14262.1.S1_at11/114+25878628..25879919expressed protein
LOC_Os04g44060Os.5916.1.S1_s_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060OsAffx.24678.1.S1_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060Os.31191.2.S1_x_at1/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44070Os.53205.1.S1_at11/114+25884676..25886798expressed protein
LOC_Os04g44080NANA4+25887401..25887986hypothetical protein
LOC_Os04g44090Os.54162.1.S1_at11/114+25889081..25892266expressed protein
LOC_Os04g44100Os.53622.1.S1_at11/114+25892608..25894832expressed protein
LOC_Os04g44110Os.16890.1.S1_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44110Os.16890.1.S2_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44120NANA4+25899417..25899785expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52693.1.S1_at--1075--10771Chr04:25874090..25874114 (25 bp)
TTGATTCCTGGTACAACATAGTCGA
LOC_Os04g44030
Os.52693.1.S1_at--771--2991Chr04:25874125..25874149 (25 bp)
AATGTTGTTCACTTTAGCCTGTTTG
LOC_Os04g44030
Os.52693.1.S1_at--606--3311Chr04:25874134..25874158 (25 bp)
CACTTTAGCCTGTTTGGGTTTTGCA
LOC_Os04g44030
Os.52693.1.S1_at--925--9231Chr04:25874197..25874221 (25 bp)
TCCATCATGGCTTGACACTTCTTAG
LOC_Os04g44030
Os.52693.1.S1_at--641--5611Chr04:25874210..25874234 (25 bp)
GACACTTCTTAGTCTGAACTCTGTA
LOC_Os04g44030
Os.52693.1.S1_at--272--10871Chr04:25874260..25874284 (25 bp)
TTGGCATATTATGGACTCGAGTTCA
LOC_Os04g44030
Os.52693.1.S1_at--1083--7431Chr04:25874292..25874316 (25 bp)
GTGTACTGCGTGTCATCTTTTTTCC
LOC_Os04g44030
Os.52693.1.S1_at--51--2291Chr04:25874350..25874374 (25 bp)
AAATGCTTTTGATCACTCTTTGAGA
LOC_Os04g44030
Os.52693.1.S1_at--377--7811Chr04:25874402..25874426 (25 bp)
GGTCAGTACTGATCACACATTGCAC
LOC_Os04g44030
Os.52693.1.S1_at--740--8771Chr04:25874601..25874625 (25 bp)
TGTTTCTATTCATGACGTGTCTACC
LOC_Os04g44030
Os.52693.1.S1_at--713--5751Chr04:25874614..25874638 (25 bp)
GACGTGTCTACCAGGGAGGATTTAC
LOC_Os04g44030
Target Sequence 
TTGATTCCTGGTACAACATAGTCGAGATAAAACATAATGTTGTTCACTTTAGCCTGTTTGGGTTTTGCAAAACTCCATAG
ATATGCAGAAGAGAAATGCTATCCCACTCCATCATGGCTTGACACTTCTTAGTCTGAACTCTGTAGAATTTTAAGGATTG
CCTTCTAATTTTGGCATATTATGGACTCGAGTTCANGATGTGGTGTACTGCGTGTCATCTTTTTTCCCTTACCAAGNTAC
CCCTGCTATATAGCTTCTCCAAATGCTTTTGATCACTCTTTGAGAAAGGCATGTTGGAAAACAGAAACATGTGGTCAGTA
CTGATCACACATTGCACAAGATGGNACTGNTTCTTCTTCGNTGAACCTAGATTATCTTCTTTAGNGNTTCTCTGGAACAA
CAAACCTCTNGAATNGTTAAAGATTCAGTAGCATTGAGTAAAACTACNACAGGNTATGNCTACTGNTACCACTGNTTGAN
GCNCTTCCATCCTATAGAAATCAATAGCTAATGTTTCTATTCATGACGTGTCTACCAGGGAGGATTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis