Browse Element(s) Details


Os.52694.1.S1_at

Description gb:AK068794.1
DB_XREF= gi:32978819
TID=Os.52694.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013162N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162N11, full insert sequence.
FL= gb:AK068794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4603011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46000Os.12811.2.S1_x_at10/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.1.S1_at9/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.2.S1_at1/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46010NANA6+27881060..27881350hypothetical protein
LOC_Os06g46020OsAffx.5121.1.S1_at11/116+27883600..27883983hypothetical protein
LOC_Os06g46030Os.52694.1.S1_at11/116+27903555..27905637expressed protein
LOC_Os06g46030OsAffx.21629.2.S1_x_at1/116+27903555..27905637expressed protein
LOC_Os06g46040NANA6+27907808..27908884retrotransposon protein, putative, unclassified
LOC_Os06g46050OsAffx.15945.1.S1_at11/116+27914460..27915050hypothetical protein
LOC_Os06g46060Os.49463.1.S1_at11/116+27922527..27925282expressed protein
LOC_Os06g46060OsAffx.15946.1.S1_x_at2/116+27922527..27925282expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52694.1.S1_at--919--1271Chr06:27904191..27904215 (25 bp)
AGATCAGCCGACGTGCGGCCGATGC
LOC_Os06g46030
Os.52694.1.S1_at--755--10531Chr06:27904131..27904155 (25 bp)
TTCATGCACGGACACTTCCTCGTAC
LOC_Os06g46030
Os.52694.1.S1_at--1011--4511Chr06:27903943..27903967 (25 bp)
GCCGCTGTCCGTGTTTAACTAGCAG
LOC_Os06g46030
Os.52694.1.S1_at--887--3211Chr06:27903884..27903908 (25 bp)
CAAGGTAGGGCTTAATCAAATCCGG
LOC_Os06g46030
Os.52694.1.S1_at--780--8531Chr06:27903842..27903866 (25 bp)
TGGATTACTCCAACCTTAGTTCGTT
LOC_Os06g46030
Os.52694.1.S1_at--94--1212Chr11:4493907..4493941 (25 bp)
AGTTCGTTAAAACCGATCGATCGAT
NONE
Os.52694.1.S1_at--93--9391Chr06:27903801..27903825 (25 bp)
TCGATGGATCGATGCGTCTCATCAT
LOC_Os06g46030
Os.52694.1.S1_at--592--7931Chr06:27903755..27903779 (25 bp)
GGATTCGATTCGATCGAGCTATCAA
LOC_Os06g46030
Os.52694.1.S1_at--260--6391Chr06:27903744..27903768 (25 bp)
GATCGAGCTATCAACGTAGCGCTAC
LOC_Os06g46030
Os.52694.1.S1_at--441--6971Chr06:27903729..27903753 (25 bp)
GTAGCGCTACTGTGTATGTACTGTT
LOC_Os06g46030
Os.52694.1.S1_at--949--7411Chr06:27903703..27903727 (25 bp)
GTGTTCTTATCAAACTCTACTCTTT
LOC_Os06g46030
Target Sequence 
AGATCAGCCGACGTGCGGCCGATGCCACCGGAGGGCCACTTCTTCATCCCGCACCCACACTTCATGCACGGACACTTCCT
CGTACCGGGCGGCGACGCCGACCACCACCACCAGGTCTCCAACGCCGGCAATGGCGGCAACACCAACACCAACACCAACA
CCAACACCGGCGGCGGCGGCGGCAACGGCGACGAGATGGCGGTGGCGATGGCGGCGGTGGCGGAGGCGCACGCGGCGGGG
TGCATGCTGCCGCTGTCCGTGTTTAACTAGCAGTAATATTCAGAGATCAGCAGCATATAGCAAAAATCAAGGTAGGGCTT
AATCAAATCCGGGGGAGGGTTTTAATTAATGGATTACTCCAACCTTAGTTCGTTAAAACCGATCGATCGATCGATGGATC
GATGCGTCTCATCATGATGGAATGATGGATTCGATTGGATTCGATTCGATCGAGCTATCAACGTAGCGCTACTGTGTATG
TACTGTTTGTGTTCTTATCAAACTCTACTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis