Browse Element(s) Details


Os.52777.1.S1_s_at

Description gb:AK069208.1
DB_XREF= gi:32979232
TID=Os.52777.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009C22, full insert sequence.
FL= gb:AK069208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3634011/11expressed protein
LOC_Os02g293901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36260Os.50985.1.S1_at11/115+21408757..21410423Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os05g36270Os.25619.1.S1_at10/115+21410700..21413652Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os05g36280Os.10246.2.S1_at11/115+21416261..21416993Histone H3, putative, expressed
LOC_Os05g36290Os.11355.1.S1_at11/115+21417384..21421062Actin-1, putative, expressed
LOC_Os05g36300OsAffx.27197.1.S1_at5/115+21425089..21425355expressed protein
LOC_Os05g36310Os.55524.1.S1_at10/115+21426203..21427428Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g36320OsAffx.5118.1.S1_x_at3/115+21428656..21429066hypothetical protein
LOC_Os05g36330OsAffx.5136.1.S1_at4/115+21429425..21429628hypothetical protein
LOC_Os05g36340Os.52777.1.S1_s_at11/115+21431220..21432061expressed protein
LOC_Os05g36350OsAffx.4540.1.S1_at11/115+21434936..21436624pentatricopeptide, putative, expressed
LOC_Os05g36360Os.14854.1.S1_at11/115+21441985..21443573U-box domain containing protein, expressed
LOC_Os05g36370OsAffx.27198.1.S1_at11/115+21444128..21445585hypothetical protein
LOC_Os05g36380OsAffx.4541.1.S1_at11/115+21445897..21447031hypothetical protein
LOC_Os05g36390OsAffx.22848.3.S1_x_at2/115+21452268..21454435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g36400NANA5+21456602..21461339retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52777.1.S1_s_at--161--4191Chr05:21431478..21431502 (25 bp)
CCCTTGCATCCGTCACAGGCGGAGG
LOC_Os05g36340
Os.52777.1.S1_s_at--613--3632Chr05:21431564..21431588 (25 bp)
CTTGCAGATCCAGCAGAGGGCCGGT
LOC_Os05g36340
Os.52777.1.S1_s_at--959--10296Chr05:21431888..21431912 (25 bp)
TTTCGCGTGCGGGTGCGTCACTCGC
LOC_Os05g36340
Os.52777.1.S1_s_at--73--9152Chr05:21431895..21431919 (25 bp)
TGCGGGTGCGTCACTCGCACAAAAA
LOC_Os05g36340
Os.52777.1.S1_s_at--1096--3995Chr06:22816544..22816563 (20 bp)
CGTGCATTTTCGCAGACGATTTCTT
NONE
Os.52777.1.S1_s_at--403--4951Chr05:21431926..21431950 (25 bp)
GCATTTTCGCAGACGATTTCTTCCA
LOC_Os05g36340
Os.52777.1.S1_s_at--644--6534Chr05:21431940..21431964 (25 bp)
GATTTCTTCCAGACGGTCGAATCTT
LOC_Os05g36340
Os.52777.1.S1_s_at--350--3972Chr05:21431953..21431977 (25 bp)
CGGTCGAATCTTCCGCACGCGAAAA
LOC_Os05g36340
Os.52777.1.S1_s_at--759--5511Chr05:21431973..21431997 (25 bp)
GAAAATCGATTTCATCCTCACGGAA
LOC_Os05g36340
Os.52777.1.S1_s_at--421--571Chr05:21431986..21432010 (25 bp)
ATCCTCACGGAAAAATCCTCGTAGT
LOC_Os05g36340
Os.52777.1.S1_s_at--957--2431Chr05:21431997..21432021 (25 bp)
AAAATCCTCGTAGTAGTAGGGTGTG
LOC_Os05g36340
Target Sequence 
CCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAGGCGGCGCGCGGCCCCTCCCTTCCCCCCTCG
GCTACCCTTGCAGATCCAGCAGAGGGCCGGTGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGC
AGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGTGAAGGTAACGGAC
GGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCGGCTAGGGTGGCGGTGCCGGCGGCGGCGGCTGGA
TTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGC
GAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTTCCAGACGGTC
GAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAATCCTCGTAGTAGTAGGGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52777.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis