Browse Element(s) Details


Os.52793.1.S1_at

Description gb:AK069293.1
DB_XREF= gi:32979317
TID=Os.52793.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013B19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013B19, full insert sequence.
FL= gb:AK069293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4384011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43810OsAffx.26617.4.S1_x_at8/114+25719081..25722589hypothetical protein
LOC_Os04g43820Os.51568.1.S1_at10/114+25724344..25728356hypothetical protein
LOC_Os04g43820OsAffx.4078.1.S1_at10/114+25724344..25728356hypothetical protein
LOC_Os04g43829NANA4+25730563..25730910NA
LOC_Os04g43840Os.52793.1.S1_at11/114+25740318..25744423expressed protein
LOC_Os04g43850Os.14919.1.S1_at5/114+25746517..25750579transposon protein, putative, Mutator sub-class
LOC_Os04g43850Os.56216.1.S1_at1/114+25746517..25750579transposon protein, putative, Mutator sub-class
LOC_Os04g43860OsAffx.27607.1.S1_at11/114+25757838..25759963hypothetical protein
LOC_Os04g43860OsAffx.27607.2.S1_s_at11/114+25757838..25759963hypothetical protein
LOC_Os04g43870NANA4+25762405..25767741transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52793.1.S1_at--570--9271Chr04:25743581..25743605 (25 bp)
TCCTGGAAGTAATTGCCTGGGCTCA
LOC_Os04g43840
Os.52793.1.S1_at--443--4471Chr04:25743767..25743788 (22 bp)
GCCGGTTGGCCTGCTAAATGTGGAC
LOC_Os04g43840
Os.52793.1.S1_at--492--4431Chr04:25743859..25743883 (25 bp)
GCCATATCATCGTGTTAGCTCCAAC
LOC_Os04g43840
Os.52793.1.S1_at--511--4771Chr04:25743876..25743900 (25 bp)
GCTCCAACACCAAAAGAACTTCTCG
LOC_Os04g43840
Os.52793.1.S1_at--864--4031Chr04:25743899..25744054 (25 bp)
CGAGAAGCTAGAGGCGTACTCCCCT
LOC_Os04g43840
Os.52793.1.S1_at--403--9151Chr04:25744118..25744142 (25 bp)
TGCGAGATCCCTGGCCTGAAAGAAG
LOC_Os04g43840
Os.52793.1.S1_at--103--2951Chr04:25744148..25744172 (25 bp)
AAGGCGACCATCCAAGCACAGCGAG
LOC_Os04g43840
Os.52793.1.S1_at--302--5111Chr04:25744163..25744187 (25 bp)
GCACAGCGAGGAAGCATGCTCTGAA
LOC_Os04g43840
Os.52793.1.S1_at--976--291Chr04:25744211..25744235 (25 bp)
ATAGCTTAGCCAATGCGTGCAGCAA
LOC_Os04g43840
Os.52793.1.S1_at--5--10051Chr04:25744328..25744352 (25 bp)
TAGTCGTGTACGTAGCCCTAAGAAT
LOC_Os04g43840
Os.52793.1.S1_at--1001--7031Chr04:25744372..25744396 (25 bp)
GTAAATCACAGAGCTCCAGAGCAGC
LOC_Os04g43840
Target Sequence 
TCCTGGAAGTAATTGCCTGGGCTCAGCTCGGCATTCACGACAAGCCGGTTGGCCTGCTAAATGTGGACGGCTACTACAAC
TCTCTGCTGTCGTTCATCGATAAAGCTGTGGAGGAAGAGTTCATCAGCCCCTCTGCGCGCCATATCATCGTGTTAGCTCC
AACACCAAAAGAACTTCTCGAGAAGCTAGAGGCGTACTCCCCTCGGCATGACAAGGTCGTGCCGAAGATGCAGTGGGAGA
TGGAGAAGATGAGCTACTGCAAGAGCTGCGAGATCCCTGGCCTGAAAGAAGGCAACAAGGCGACCATCCAAGCACAGCGA
GGAAGCATGCTCTGAAATTTACTGTAGCACTAGCTAGCTATAGCTTAGCCAATGCGTGCAGCAAGAAGATTCAAAACTTC
TTGGTGCACATGAACTGCAACTTTTAATTCATGTAACTCGGTTCATTAGAAGGCAATTGATCACTGATCATGCAATTAGT
CGTGTACGTAGCCCTAAGAATGAAATCATCAGTAAGATTTGTAAATCACAGAGCTCCAGAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis