Browse Element(s) Details


Os.5280.1.S1_at

Description gb:AK120714.1
DB_XREF= gi:37990337
TID=Os.5280.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002A11, full insert sequence.
FL= gb:AK120714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7032010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70270Os.11696.1.S1_a_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.1.S1_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.2.S1_x_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70280OsAffx.23987.1.S1_at11/111+41031643..41032571hypothetical protein
LOC_Os01g70280OsAffx.4205.1.S1_x_at1/111+41031643..41032571hypothetical protein
LOC_Os01g70290OsAffx.9650.1.S1_at11/111+41033824..41034972hypothetical protein
LOC_Os01g70300Os.3448.1.S1_a_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70300Os.3448.2.S1_x_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70310Os.13595.2.S1_x_at11/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70310Os.13595.1.S1_at10/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70320Os.5280.1.S1_at10/111+41050234..41057356expressed protein
LOC_Os01g70330Os.22821.1.S1_a_at11/111+41065947..41070532Prefoldin subunit family protein, expressed
LOC_Os01g70340Os.28507.1.S1_at11/111+41070852..41077671expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5280.1.S1_at--243--4911Chr01:41051599..41051623 (25 bp)
GCTTCAGTTCTGGATTGGTCGCAAT
LOC_Os01g70320
Os.5280.1.S1_at--56--6611Chr01:41051587..41051611 (25 bp)
GATTGGTCGCAATGCAGTAGCCCCA
LOC_Os01g70320
Os.5280.1.S1_at--139--5251Chr01:41050628..41050652 (25 bp)
GAATCACTAGGCACATCTCAAGGTT
LOC_Os01g70320
Os.5280.1.S1_at--123--5591Chr01:41050567..41050591 (25 bp)
GAAATGCTTTTTCGCGGCTGGTCTT
LOC_Os01g70320
Os.5280.1.S1_at--529--7311Chr01:41050512..41050536 (25 bp)
GTGCTGCAATCTTCGGGTGTTGAGC
LOC_Os01g70320
Os.5280.1.S1_at--994--4991Chr01:41050482..41050506 (25 bp)
GCAGTCTTCGGGTGTTGAGCGATAT
LOC_Os01g70320
Os.5280.1.S1_at--467--7331Chr01:41050430..41050454 (25 bp)
GTGCATGTGCGAGCCATTTATCTTT
LOC_Os01g70320
Os.5280.1.S1_at--865--2971Chr01:41050386..41050410 (25 bp)
AATGTGTAATTGTTTTGTCCTGGCA
LOC_Os01g70320
Os.5280.1.S1_at--1088--7751Chr01:41050354..41050378 (25 bp)
GGTGATCTCACTTCATCCAATTTGT
LOC_Os01g70320
Os.5280.1.S1_at--969--5391Chr01:41050272..41050296 (25 bp)
GAAGCTATGCTTCCTGCGACAAATG
LOC_Os01g70320
Os.5280.1.S1_at--625--8871Chr01:41050234..41050258 (25 bp)
TGATGATTCTTTCTGGTAGTCTGCC
NONE
Target Sequence 
GCTTCAGTTCTGGATTGGTCGCAATGCAGTAGCCCCAACTTCTCATGATGCTATAGATGTGGAGCGAGGTCTAACAGAGC
TCAGGAAACTGGGCATAGAGCAGCAACTGTGGGAAGGATCACGTGCAGATATCGATGAAGATTCATCGGCAATTGAGAAT
CACTAGGCACATCTCAAGGTTGTTTATGGTACATGATTATTCCAATTTTGGAGAATGGAAATGCTTTTTCGCGGCTGGTC
TTGGGCCATTGCCATCATTGGATCCCTGAATGGTGCTGCAATCTTCGGGTGTTGAGCAATGGGCAGTCTTCGGGTGTTGA
GCGATATTATGGGCTTGTCCAGAGATATTGTGTAGTGCATGTGCGAGCCATTTATCTTTTGTCGAAATATTTTTGTGAAA
TGTGTAATTGTTTTGTCCTGGCAATATGATGGTGATCTCACTTCATCCAATTTGTGAATTTGTGATTACACCACATGTGT
ACTGCCTGTTATTCAGTAAAATATACAGAGAGGAAGCTATGCTTCCTGCGACAAATGAGCAAATCATAAGTGATGATTCT
TTCTGGTAGTCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis