Browse Element(s) Details


Os.52823.1.S1_at

Description gb:AK069457.1
DB_XREF= gi:32979481
TID=Os.52823.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019M11, full insert sequence.
FL= gb:AK069457.1 gb:AK103261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g310909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31080OsAffx.19542.3.S1_x_at10/114+18390485..18394720retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31090Os.52823.1.S1_at9/114+18402286..18406681hypothetical protein
LOC_Os04g31090OsAffx.14062.1.S1_at7/114+18402286..18406681hypothetical protein
LOC_Os04g31090Os.17370.1.S1_x_at1/114+18402286..18406681hypothetical protein
LOC_Os04g31100NANA4+18408145..18408402hypothetical protein
LOC_Os04g31110Os.24608.1.S1_at11/114+18411480..18414039expressed protein
LOC_Os04g31120Os.15607.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19105.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19525.1.S1_at9/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31130OsAffx.26265.1.S1_at11/114+18427330..18427677hypothetical protein
LOC_Os04g31140Os.24325.1.A1_at11/114+18429825..18432081expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52823.1.S1_at--465--631NONE
ATGACCCAGGGCAGGTCTTACAACA
NONE
Os.52823.1.S1_at--461--1811NONE
ACCCAGGGCAGGTCTTACAACAAAG
NONE
Os.52823.1.S1_at--948--4271Chr04:18402610..18402968 (25 bp)
CCTACAAACTGAAACTGGGCAGCAT
LOC_Os04g31090
Os.52823.1.S1_at--376--1931Chr04:18402597..18402621 (25 bp)
ACTGGGCAGCATTAGGAAAGGAATC
LOC_Os04g31090
Os.52823.1.S1_at--644--5231Chr04:18402577..18402601 (25 bp)
GAATCAAACATGAGAAGGCGGCTCT
LOC_Os04g31090
Os.52823.1.S1_at--350--2951Chr04:18402563..18402587 (25 bp)
AAGGCGGCTCTATTTTTTGACATAA
LOC_Os04g31090
Os.52823.1.S1_at--410--7331Chr04:18402529..18402553 (25 bp)
GTGAGGTAGATGTCGATGTCAAAGA
LOC_Os04g31090
Os.52823.1.S1_at--159--6271Chr04:18402521..18402545 (25 bp)
GATGTCGATGTCAAAGAGAGCAGCA
LOC_Os04g31090
Os.52823.1.S1_at--588--6011Chr04:18402506..18402530 (25 bp)
GAGAGCAGCAAGTGCCTATGGATCT
LOC_Os04g31090
Os.52823.1.S1_at--56--5191Chr04:18402499..18402523 (25 bp)
GCAAGTGCCTATGGATCTACCTACA
LOC_Os04g31090
Os.52823.1.S1_at--144--831Chr04:18402489..18402513 (25 bp)
ATGGATCTACCTACATGTTTACTGG
LOC_Os04g31090
Target Sequence 
ATGACCCAGGGCAGGTCTTACAACAAAGATATGATCTGGTGGTCTACTGAAGGAACCATTATTCAGTGTTGCCTACAAAC
TGAAACTGGGCAGCATTAGGAAAGGAATCAAACATGAGAAGGCGGCTCTATTTTTTGACATAATAGTTTTCAGTGAGGTA
GATGTCGATGTCAAAGAGAGCAGCAAGTGCCTATGGATCTACCTACATGTTTACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis