Browse Element(s) Details


Os.5283.1.S1_at

Description gb:AK111781.1
DB_XREF= gi:37988444
TID=Os.5283.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full insert sequence.
FL= gb:AK104898.1 gb:AK111781.1 gb:AK111741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0151011/11Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os12g015206/11Ubiquitin-activating enzyme E1 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01460Os.52782.1.S1_at1/1111+268028..270933hypothetical protein
LOC_Os11g01470NANA11+271765..279565retrotransposon protein, putative, unclassified
LOC_Os11g01480Os.18448.1.S1_s_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01480OsAffx.30765.1.S1_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01490Os.28272.2.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_x_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01500NANA11+290960..291905hypothetical protein
LOC_Os11g01510Os.5283.1.S1_at11/1111+294669..300588Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os11g01520NANA11+301445..301804hypothetical protein
LOC_Os11g01530OsAffx.30767.1.S1_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.4.S1_s_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.3.S1_x_at1/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01540OsAffx.31540.2.S1_s_at11/1111+307804..309616expressed protein
LOC_Os11g01540OsAffx.31540.2.S1_at10/1111+307804..309616expressed protein
LOC_Os11g01550Os.56072.1.S1_at7/1111+313616..314451LOB domain protein 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0016567biological_processprotein ubiquitination
GO:0016925biological_processprotein sumoylation
GO:0005634cellular_componentnucleus
GO:0004839molecular_functionubiquitin activating enzyme activity
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0019948molecular_functionSUMO activating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5283.1.S1_at--970--7632Chr12:312414..312438 (25 bp)
GGGACCGCTGGACCATAACTGGCAA
LOC_Os12g01520
Os.5283.1.S1_at--426--9812Chr12:312399..312423 (25 bp)
TAACTGGCAACATCACGCTGAGGGA
LOC_Os12g01520
Os.5283.1.S1_at--131--4972Chr12:312340..312364 (25 bp)
GCATACAGCATATCTTGCGGCACCT
LOC_Os12g01520
Os.5283.1.S1_at--200--7032Chr12:312308..312332 (25 bp)
GTACAACTCAATGTTCCCGAGGCAC
LOC_Os12g01520
Os.5283.1.S1_at--338--292Chr12:312218..312242 (25 bp)
ATACCGGCGCCATCTTGACGTGGTG
LOC_Os12g01520
Os.5283.1.S1_at--705--2592Chr12:312169..312193 (25 bp)
AACGACGTTGACATCCCACTGGTAT
LOC_Os12g01520
Os.5283.1.S1_at--1009--1952Chr12:312152..312176 (25 bp)
ACTGGTATCAATCTACTTCCGGTGA
NONE
Os.5283.1.S1_at--672--3332Chr12:312115..312139 (25 bp)
CACTCCGTTGACATGGCGTTGGATT
NONE
Os.5283.1.S1_at--719--10692Chr12:312062..312086 (25 bp)
TTGCACCGGTGCCTGTAAACTAAGT
NONE
Os.5283.1.S1_at--1056--10452Chr12:311966..311990 (25 bp)
TTACCATCCCCGAAACTTGATACGA
NONE
Os.5283.1.S1_at--878--8852Chr12:311923..311947 (25 bp)
TGATGCATGATGATACCGTACGACT
NONE
Target Sequence 
GGGACCGCTGGACCATAACTGGCAACATCACGCTGAGGGAGCTNCTGGACTGGCTCAAGGAGAAGGGCCTGAATGCATAC
AGCATATCTTGCGGCACCTCGCTGCTGTACAACTCAATGTTCCCGAGGCACAAGGAGCGTCTAGACAAGAAGGTGGTCGA
TGTGGCGAGGGAGGTGGCAAAGGTGGAGGTGCCCCCATACCGGCGCCATCTTGACGTGGTGGTGGCTTGTGAGGACGATG
ATGACAACGACGTTGACATCCCACTGGTATCAATCTACTTCCGGTGAAGTAGGGGCTGTCACTCCGTTGACATGGCGTTG
GATTTGGTCTTTTCAGAGAGACGATGTATAAGTTGCACCGGTGCCTGTAAACTAAGTGGGGGTTTAAGCCACATTACTGA
TTTTATTTTGCTACCATCTTGATAGAGCTCGTTCAGATGGGTGGTTTGTTACCATCCCCGAAACTTGATACGATACCATC
ATATTGATAATTGATGCATGATGATACCGTACGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis