Browse Element(s) Details


Os.52837.1.S1_x_at

Description gb:AK069524.1
DB_XREF= gi:32979548
TID=Os.52837.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024G06, full insert sequence.
FL= gb:AK069524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5664011/11transcription factor jumonji, putative, expressed
LOC_Os02g505501/11Dynamin-2B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56600Os.11758.1.S1_at11/111+32979330..32983443Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os01g56610Os.32439.1.S1_at11/111+32983604..32985329Homocysteine S-methyltransferase 4, putative, expressed
LOC_Os01g56620OsAffx.21592.2.S1_at11/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620OsAffx.21592.1.S1_x_at6/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620Os.49125.1.S1_s_at1/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56630Os.11030.1.S1_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56630Os.11030.2.S1_x_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56640Os.46124.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_x_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.10599.1.S1_x_at10/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56650OsAffx.9407.1.S1_at11/111+33009831..33010235hypothetical protein
LOC_Os01g56660OsAffx.21591.1.S1_at11/111+33020608..33023334hypothetical protein
LOC_Os01g56670Os.17630.1.S1_s_at11/111+33025872..33036119Glycosyl hydrolase family 47 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0006896biological_processGolgi to vacuole transport
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016192biological_processvesicle-mediated transport
GO:0005794cellular_componentGolgi apparatus
GO:0005874cellular_componentmicrotubule
GO:0009504cellular_componentcell plate
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0003700molecular_functiontranscription factor activity
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52837.1.S1_x_at--379--10492Chr02:30862857..30862877 (21 bp)
TTAAACATCTTTCACATTTCATTGG
LOC_Os02g50550
Os.52837.1.S1_x_at--1013--7831Chr01:33004967..33004991 (25 bp)
GGTACAACTGTTTGTCAGCCTACAG
LOC_Os01g56640
Os.52837.1.S1_x_at--788--3471Chr01:33004668..33004688 (21 bp)
CAGGAGGTCCTGAGCAATTGAAGCA
LOC_Os01g56640
Os.52837.1.S1_x_at--890--1251Chr01:33004610..33004634 (25 bp)
AGATTCACCACTGCAAACTCTGGAA
LOC_Os01g56640
Os.52837.1.S1_x_at--194--1811Chr01:33004579..33004603 (25 bp)
ACCCTCCAAGCACTTTATGAACTCA
LOC_Os01g56640
Os.52837.1.S1_x_at--40--2551Chr01:33004560..33004584 (25 bp)
AACTCATCTCACTGGTTCACAACAG
LOC_Os01g56640
Os.52837.1.S1_x_at--51--5051Chr01:33004447..33004471 (25 bp)
GCAGATGATTCATCTCTCTTGGAGA
LOC_Os01g56640
Os.52837.1.S1_x_at--905--10731Chr01:33004378..33004402 (25 bp)
TTGCAGAGTATGCTGCTTGCCATGG
LOC_Os01g56640
Os.52837.1.S1_x_at--257--3591Chr01:33004303..33004327 (25 bp)
CATTTTCTTTTCTTTCATCTATCTT
LOC_Os01g56640
Os.52837.1.S1_x_at--380--9551Chr01:33004286..33004310 (25 bp)
TCTATCTTTGTACATTCTAGCCCTC
LOC_Os01g56640
Os.52837.1.S1_x_at--710--9991Chr01:33004269..33004293 (25 bp)
TAGCCCTCCTCTTTGACATTAGAAT
LOC_Os01g56640
Target Sequence 
TTAAACATCTTTCACATTTCATTGGNNNNANNNTNNNNNNNNNNANNNNNTNNNNNNNANGNNGNNGAACAAAATGGTGC
AGGAGAATTCTGTTTCTTGTTCAAAAGGTACAACTGTTTGTCAGCCTACAGATGAAGAATCAGGAGGTCCTGAGCAATTG
AAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAAAAGATTCACCACTGCAAACTCTGGAACCGTCCACCCTCCAAGC
ACTTTATGAACTCATCTCACTGGTTCACAACAGTGCTGAAATGGTTAGCCAAAACGAAATAACAGAACCTACATCTCAGG
ATGCATATTGCAAGCAAAGCAATGGAAGTAAGAAGATTGCTGCAGATGATTCATCTCTCTTGGAGAAAGATCCTATTGCA
AAAATAATTTTACCACTNCAAACCGCTTGNAATTGCAGAGTATGCTGCTTGCCATGGNNGNNTNNNTTNNNANNNANAAA
TTTTATCTGCTGATACTGATACCATATCATTTTCTTTTCTTTCATCTATCTTTGTACATTCTAGCCCTCCTCTTTGACAT
TAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52837.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis