Browse Element(s) Details


Os.52859.1.S1_at

Description gb:AK069625.1
DB_XREF= gi:32979649
TID=Os.52859.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023023L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023L24, full insert sequence.
FL= gb:AK069625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0975011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09710Os.56260.1.S1_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09710Os.56260.1.S1_x_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_x_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720Os.57083.1.S1_x_at10/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09730Os.54840.1.S1_at11/118+5617319..5620279F-box domain containing protein, expressed
LOC_Os08g09740Os.51875.1.S1_at10/118+5622786..5626083F-box domain containing protein, expressed
LOC_Os08g09750Os.52859.1.S1_at11/118+5627002..5629876F-box domain containing protein, expressed
LOC_Os08g09760Os.18985.1.S1_at11/118+5631925..5636857F-box domain containing protein, expressed
LOC_Os08g09770Os.54759.1.S1_at2/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09770OsAffx.24785.1.S1_x_at1/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09780Os.53513.1.S1_at11/118+5646337..5649305expressed protein
LOC_Os08g09790OsAffx.15141.3.S1_s_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790OsAffx.15141.2.S1_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.50851.1.S1_at6/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.8747.1.S2_x_at1/118+5652383..5656315hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52859.1.S1_at--870--9871Chr08:5628977..5629001 (25 bp)
TACATTAATCTTCTTGCTACAGCGT
LOC_Os08g09750
Os.52859.1.S1_at--998--7051Chr08:5629220..5629244 (25 bp)
GTAAGAGTGCACACACTGGCATGTT
LOC_Os08g09750
Os.52859.1.S1_at--918--6731Chr08:5629246..5629270 (25 bp)
GTTCAGAGCGAACGGTATTCCCATT
LOC_Os08g09750
Os.52859.1.S1_at--101--771Chr08:5629281..5629304 (24 bp)
ATGTCCGTCGGACTGGGAGTTCTTA
LOC_Os08g09750
Os.52859.1.S1_at--287--6071Chr08:5629297..5629606 (25 bp)
GAGTTCTTACCTCCGTGGCGAGAAG
LOC_Os08g09750
Os.52859.1.S1_at--279--6071Chr08:5629658..5629682 (25 bp)
GAGTTCTGTGGTCCAAATTCCGAGT
LOC_Os08g09750
Os.52859.1.S1_at--1055--3291Chr08:5629671..5629695 (25 bp)
CAAATTCCGAGTTCTGTGGTTCAGA
LOC_Os08g09750
Os.52859.1.S1_at--477--8131Chr08:5629739..5629763 (25 bp)
GGACTAGCTATCGTTTATCATATCT
LOC_Os08g09750
Os.52859.1.S1_at--22--8571Chr08:5629791..5629815 (25 bp)
TGGATTGCAACCATCTCTAATTAAT
LOC_Os08g09750
Os.52859.1.S1_at--483--611Chr08:5629830..5629854 (25 bp)
ATGCTCTGACGGCAAGAACCCATTA
LOC_Os08g09750
Os.52859.1.S1_at--908--10491Chr08:5629852..5629876 (25 bp)
TTAAGTACCGAGTTGCAGGGCCGTG
LOC_Os08g09750
Target Sequence 
TACATTAATCTTCTTGCTACAGCGTTCACCTAATTTGCAGAGGCTTTTCCTTAAACTTAAATTGAACTTCAATACTAGGA
AGCCGTTGGAGAGCGGTGCTAAACCTATGGGAAGATCATTTACTTGTAAAGACCTGCAAATGGTGAAGATCAGATGCTCT
AAGGATGATGTAAGAGTGCACACACTGGCATGTTTGTTCAGAGCGAACGGTATTCCCATTGAGAAGATTTATGTCCGTCG
GACTGGGAGTTCTTACCTCCGTGGCGAGAAGTTTATGAGAGACCTAGGCAAACATGAACTGGAGTTCTGGGGGTCAGATT
CAGAGTTCTGTGGTCCAAATTCCGAGTTCTGTGGTTCAGATTCAGAGTTTGAGGATTCAGATATGGAGTTCTGATGCAAC
ATTGGACTAGCTATCGTTTATCATATCTTCTACTCATATTATTAGTTATTATCTTTGGATTGCAACCATCTCTAATTAAT
GTACTACTTAGAAAATGCTCTGACGGCAAGAACCCATTAAGTACCGAGTTGCAGGGCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis