Browse Element(s) Details


Os.52873.1.S1_a_at

Description gb:AK069666.1
DB_XREF= gi:32979690
TID=Os.52873.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023097B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028O05, full insert sequence.
FL= gb:AK099106.1 gb:AK069666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2555011/11ATPase 7, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25490OsAffx.14625.1.S1_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25490OsAffx.14625.1.S1_x_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25500OsAffx.4426.1.S1_at11/115+14747224..14747754hypothetical protein
LOC_Os05g25510OsAffx.4427.1.S1_at11/115+14748062..14748397hypothetical protein
LOC_Os05g25520NANA5+14754772..14755125hypothetical protein
LOC_Os05g25530OsAffx.14828.1.S1_at11/115+14759455..14759947hypothetical protein
LOC_Os05g25540Os.54960.1.S1_at11/115+14762435..14765963Protein kinase domain containing protein, expressed
LOC_Os05g25550Os.52873.1.S1_a_at11/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550OsAffx.5813.1.S1_x_at2/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550Os.8093.2.S1_x_at1/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25560OsAffx.14829.1.S1_x_at11/115+14776360..14778210endo-1,4-beta-xylanase, putative
LOC_Os05g25560OsAffx.14829.2.S1_x_at3/115+14776360..14778210endo-1,4-beta-xylanase, putative
LOC_Os05g25570OsAffx.380.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25570OsAffx.25972.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25570OsAffx.15069.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25580NANA5+14788494..14791639F-box domain containing protein, expressed
LOC_Os05g25590OsAffx.24052.1.S1_at1/115+14795825..14796469hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52873.1.S1_a_at--18--10671Chr05:14771036..14771060 (25 bp)
TTCCTCAGCGGCAAAGCCTGGAACA
LOC_Os05g25550
Os.52873.1.S1_a_at--234--4691Chr05:14771029..14771053 (25 bp)
GCGGCAAAGCCTGGAACAACGCCTT
LOC_Os05g25550
Os.52873.1.S1_a_at--834--2211Chr05:14770900..14770921 (22 bp)
ACAAGACGGCGTTCGCGAACGAGCT
LOC_Os05g25550
Os.52873.1.S1_a_at--50--9331Chr05:14770888..14770912 (25 bp)
TCGCGAACGAGCTGGACTACGGGAA
LOC_Os05g25550
Os.52873.1.S1_a_at--783--3391Chr05:14770634..14770658 (25 bp)
CAGAACCACTACACCGTCTAGCTAG
LOC_Os05g25550
Os.52873.1.S1_a_at--1049--2091Chr05:14770624..14770648 (25 bp)
ACACCGTCTAGCTAGCACCATCGAT
LOC_Os05g25550
Os.52873.1.S1_a_at--823--331Chr05:14770601..14770625 (25 bp)
ATCTCACACGCATGAATACCATACA
LOC_Os05g25550
Os.52873.1.S1_a_at--460--311Chr05:14770586..14770610 (25 bp)
ATACCATACATGATCGATGATGCTG
LOC_Os05g25550
Os.52873.1.S1_a_at--446--6391Chr05:14770575..14770599 (25 bp)
GATCGATGATGCTGCTCGTTAGCTT
LOC_Os05g25550
Os.52873.1.S1_a_at--14--6351Chr05:14770568..14770592 (25 bp)
GATGCTGCTCGTTAGCTTGATAAGT
LOC_Os05g25550
Os.52873.1.S1_a_at--199--8971Chr05:14770431..14770455 (25 bp)
TAATGGTTTTACTTTGGAGAGGTTG
LOC_Os05g25550
Target Sequence 
TTCCTCAGCGGCAAAGCCTGGAACAACGCCTTCGACAACAAGACGGCGTTCGCGAACGAGCTGGACTACGGGAAGAGCAA
GAGGGAGGCGCAGTGGGCGATCGCGCAGAGGTCGCTGCACGGGCTGCAGCAGGCGGAGACGTCGACGGCGCTGTTCGACG
ACAACAAGGACTACCTGGAGCTGTCGGAGATCGCGGAGCAGGCGAAGCGCCGCGCCGAGATCGCCAGGCTACGGGAGCTG
CACACGCTCAAGGGCCACGTCGAGTCGGTGGTCAAGCTCAAGGGCCTCGACATCGACACCATCCAGAACCACTACACCGT
CTAGCTAGCACCATCGATCTCACACGCATGAATACCATACATGATCGATGATGCTGCTCGTTAGCTTGATAAGTGAGACA
GGATATTCTTTTTTTTTCTTTTTTTTTTGGCAGCTTAATTTAACGGGGTCAGGAGACTGTCTTAATTTGGTCAGATGAAT
AATGGGGGTACGTAGCTTTTGTTGTTTTAATGGTTTTACTTTGGAGAGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52873.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis