Browse Element(s) Details


Os.52885.1.S1_at

Description gb:AK069713.1
DB_XREF= gi:32979737
TID=Os.52885.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023033I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023033I19, full insert sequence.
FL= gb:AK069713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2665011/11heavy-metal-associated domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26610Os.46055.2.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26610Os.10827.1.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26620Os.53235.1.S1_at11/113+15187636..15189300Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S2_at11/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S1_at10/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26650Os.52885.1.S1_at11/113+15202779..15204368heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g26660OsAffx.25238.1.S1_at11/113+15208695..15208943hypothetical protein
LOC_Os03g26670OsAffx.25239.1.S1_at11/113+15211105..15211572hypothetical protein
LOC_Os03g26680OsAffx.25243.2.S1_at11/113+15214274..15214832hypothetical protein
LOC_Os03g26690OsAffx.11259.1.S1_at1/113+15216866..15221596hypothetical protein
LOC_Os03g26704OsAffx.22699.1.S1_x_at2/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.19306.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.20414.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.31697.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.22603.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52885.1.S1_at--696--971Chr03:15203985..15204009 (25 bp)
AGGAGCGGCTCACCAACCTGTTCAA
LOC_Os03g26650
Os.52885.1.S1_at--52--1851Chr03:15204024..15204048 (25 bp)
ACGCATGCTCCCTCATGTGATGAAA
LOC_Os03g26650
Os.52885.1.S1_at--461--7011Chr03:15204120..15204144 (25 bp)
GTACTAGCTTTAATTTTGGCTGTCT
LOC_Os03g26650
Os.52885.1.S1_at--152--171Chr03:15204132..15204156 (25 bp)
ATTTTGGCTGTCTGAGCGCAGTGAC
LOC_Os03g26650
Os.52885.1.S1_at--278--4591Chr03:15204147..15204171 (25 bp)
GCGCAGTGACCGAATGAGTTTGCTT
LOC_Os03g26650
Os.52885.1.S1_at--1036--6051Chr03:15204162..15204186 (25 bp)
GAGTTTGCTTGTTTTCGGTAGTTGA
LOC_Os03g26650
Os.52885.1.S1_at--1086--9431Chr03:15204176..15204200 (25 bp)
TCGGTAGTTGATTCTAGTCTAGAGT
LOC_Os03g26650
Os.52885.1.S1_at--847--9353Chr11:8714629..8714987 (25 bp)
TCGGACGTCCGATCCCAGTTAAAAT
NONE
Os.52885.1.S1_at--573--2991Chr03:15204298..15204322 (25 bp)
AATGTTGCACATGTTTCACCACTCA
LOC_Os03g26650
Os.52885.1.S1_at--519--731Chr03:15204308..15204332 (25 bp)
ATGTTTCACCACTCATTAAAAGATG
LOC_Os03g26650
Os.52885.1.S1_at--858--2511Chr03:15204341..15204365 (25 bp)
AACTTGTTTCAGATGTCCGATCACA
LOC_Os03g26650
Target Sequence 
AGGAGCGGCTCACCAACCTGTTCAACGACGAGGACCCCAACGCATGCTCCCTCATGTGATGAAAATGCAAAAGAGATCAG
AGTATCTGAGTAGCTAGATTGAAGCTTTCAATTTTAAATTCAGAGGTTTAAATTTGTACTAGCTTTAATTTTGGCTGTCT
GAGCGCAGTGACCGAATGAGTTTGCTTGTTTTCGGTAGTTGATTCTAGTCTAGAGTAAATTCCATAAAACTACAAGTATT
TTAAGGAGATGACTAGGGATCGGACGTCCGATCCCAGTTAAAATTTCAGACAATGTTTCATCACATAAAAGAAAATGTTG
CACATGTTTCACCACTCATTAAAAGATGTTTCAATAAACTTGTTTCAGATGTCCGATCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis