Browse Element(s) Details


Os.52901.1.S1_at

Description gb:AK069798.1
DB_XREF= gi:32979822
TID=Os.52901.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013020D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026H21, full insert sequence.
FL= gb:AK099438.1 gb:AK069798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4504011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44980Os.8468.1.S1_at1/115+26067505..26069239hypothetical protein
LOC_Os05g44990OsAffx.15107.1.S1_at11/115+26070126..26074441Protein kinase domain containing protein, expressed
LOC_Os05g45000OsAffx.15108.1.S1_at11/115+26076104..26077536Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g45010OsAffx.27313.1.S1_at11/115+26081562..26084201Leucine Rich Repeat family protein
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g45030Os.11098.1.S1_at11/115+26092355..26093838calcium homeostasis regulator CHoR1, putative, expressed
LOC_Os05g45040Os.52901.1.S1_at11/115+26094181..26096566F-box domain containing protein, expressed
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45060OsAffx.15109.1.S1_at11/115+26103373..26103996Zinc finger, C3HC4 type family protein
LOC_Os05g45070Os.55637.1.S1_at11/115+26106383..26107353Harpin-induced protein 1 containing protein, expressed
LOC_Os05g45080Os.52346.1.S1_at11/115+26109666..26111485UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45090NANA5+26113120..26114481UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45100NANA5+26115286..26116849UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45110Os.52713.1.S1_at2/115+26118087..26119505UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52901.1.S1_at--393--6971Chr05:26095660..26095682 (23 bp)
GTAGCTGCTGGTCTTGTCTGCTGAA
LOC_Os05g45040
Os.52901.1.S1_at--781--5291Chr05:26095756..26095780 (25 bp)
GAAGGCCTTGGAATTCTGCTGCAAA
LOC_Os05g45040
Os.52901.1.S1_at--52--9492Chr05:26095770..26095794 (25 bp)
TCTGCTGCAAATGACAACCACCTGT
LOC_Os05g45040
Os.52901.1.S1_at--1050--631Chr05:26095800..26095824 (25 bp)
ATGAATTACTCCCTTTTCTTCGGCA
LOC_Os05g45040
Os.52901.1.S1_at--961--6831Chr05:26095908..26095932 (25 bp)
GTATCTCCGGATCCTGGTTTTAACT
LOC_Os05g45040
Os.52901.1.S1_at--1069--4491Chr05:26096089..26096113 (25 bp)
GCCGATCTGTCATTTGGTTGTGCGA
LOC_Os05g45040
Os.52901.1.S1_at--1132--10811Chr05:26096106..26096130 (25 bp)
TTGTGCGACTTGACGTGTGCTACTC
LOC_Os05g45040
Os.52901.1.S1_at--495--4851Chr05:26096124..26096148 (25 bp)
GCTACTCCACACTATTGCCTTAATA
LOC_Os05g45040
Os.52901.1.S1_at--1027--8091Chr05:26096172..26096194 (23 bp)
GGACCTCTATTACCTCATACAGTTG
LOC_Os05g45040
Os.52901.1.S1_at--687--4751Chr05:26096384..26096408 (25 bp)
GCTGACTACATATTGGACATCGCTG
LOC_Os05g45040
Os.52901.1.S1_at--759--931Chr05:26096469..26096493 (25 bp)
AGGCACGCTTTTGGTCGTTGTCATA
LOC_Os05g45040
Target Sequence 
GTAGCTGCTGGTCTTGTCTGCTGAAGGCCTTGGAATTCTGCTGCAAATGACAACCACCTGTGGGAAATGAATTACTCCCT
TTTCTTCGGCATCTGCCATATAAACTGCAATAGCACACCTACAGCTGGTAATGTACAGAACACTGATTATCATGTACAGA
ATAGCATTTATCAAGTATCTCCGGATCCTGGTTTTAACTGGAAAGAGGCTTTCCACAAAAAGTATGCAGAACAAGAAACA
TGGAGTTCCGCATCAAATAGAGCATTATGTGGATATTGCCGATCTGTCATTTGGTTGTGCGACTTGACGTGTGCTACTCC
ACACTATTGCCTTAATAATGGAAAAGATGGAGTAAAACTAGGACCTCTATTACCTCATACAGTTGCTGACTACATATTGG
ACATCGCTGATCTAGCAGCTTCATCGACAGAAAGTGATGATACAGATAGCGATTCTGAAAATTATCCCCAGGCACGCTTT
TGGTCGTTGTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis