Browse Element(s) Details


Os.52917.1.S1_at

Description gb:AK069896.1
DB_XREF= gi:32979920
TID=Os.52917.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038J02, full insert sequence.
FL= gb:AK069896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g181401/11transposon protein, putative, Mutator sub-class
LOC_Os09g357701/11transposon protein, putative, Mutator sub-class
LOC_Os03g041501/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g18110Os.40360.1.S1_x_at1/114+9987225..9989206hypothetical protein
LOC_Os04g18130OsAffx.3820.1.S1_at11/114+9999392..9999664hypothetical protein
LOC_Os04g18140Os.52917.1.S1_at1/114+10003915..10005892transposon protein, putative, Mutator sub-class
LOC_Os04g18150NANA4+10008125..10008808transposon protein, putative, Mutator sub-class
LOC_Os04g18160OsAffx.22947.2.S1_x_at5/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.1.S1_x_at4/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.5.S1_x_at3/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.3.S1_x_at1/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18170Os.54151.1.S1_x_at4/114+10019868..10021709retrotransposon protein, putative, unclassified
LOC_Os04g18170Os.48015.1.A1_x_at2/114+10019868..10021709retrotransposon protein, putative, unclassified
LOC_Os04g18180OsAffx.31757.1.S1_at3/114+10025842..10026693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g18180OsAffx.31757.2.S1_at2/114+10025842..10026693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g18190OsAffx.26058.1.S1_at11/114+10030787..10031582Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52917.1.S1_at--115--6594Chr10:3358461..3358485 (25 bp)
GATTGATCCTGGCAATGCGTTTAGA
NONE
Os.52917.1.S1_at--831--7551Chr10:3358497..3358521 (25 bp)
GGGCGCTAAGTACGTAGCAGACCTA
NONE
Os.52917.1.S1_at--1073--1071Chr10:3358580..3358604 (25 bp)
AGGGCTATTCTCTTGCCAATTTGCG
NONE
Os.52917.1.S1_at--1104--7691Chr10:3358633..3358657 (25 bp)
GGGTGAGCCAACAAATTGCAGTGTG
NONE
Os.52917.1.S1_at--358--2271Chr10:3358815..3358839 (25 bp)
AAATCTAATGCACGTTGTGGGTCAA
NONE
Os.52917.1.S1_at--360--7831Chr10:3358834..3358858 (25 bp)
GGTCAAGTTTGGTTGTTGCCACTAA
NONE
Os.52917.1.S1_at--434--7771Chr10:3358862..3358886 (25 bp)
GGTGAATGCAGATCCATTTCTTGTT
NONE
Os.52917.1.S1_at--1135--6851Chr10:3358884..3358908 (25 bp)
GTTTGTCCACCTGATCATGCTGGAA
NONE
Os.52917.1.S1_at--694--5051Chr10:3358920..3358944 (25 bp)
GCAGCAAATGTGATAGGCCAGAGCA
NONE
Os.52917.1.S1_at--1061--4411Chr10:3358936..3358960 (25 bp)
GCCAGAGCAAGATGGTGATGCCTAT
NONE
Os.52917.1.S1_at--611--6351Chr10:3358952..3358976 (25 bp)
GATGCCTATGTTTTGGTGGATGAGT
NONE
Target Sequence 
GATTGATCCTGGCAATGCGTTTAGAATTGTTGTTAAGGGCGCTAAGTACGTAGCAGACCTAGAGTATGAGATGCTAGAAA
TGGCAGAACAAAGGTTTGATTTGTGGGTTGATAGATGCAAGGGCTATTCTCTTGCCAATTTGCGTGATGATATGGCAAGC
AAGATAATTTGGGGGTGAGCCAACAAATTGCAGTGTGGGGCTTGGATAATGCACTGGTGGTGGATGGAAGATGGAAACTA
ACAAAGACCTTGAACATATGATGAAGTCCAGGTGGGATGTGAATATGCTAGAAATTGGGTATTGAAGTGGTTGATAAAGA
GGGTTATGGTTCTATTCAGAGTGTTGTAGTAAACAAATCTAATGCACGTTGTGGGTCAAGTTTGGTTGTTGCCACTAAAA
TGGTGAATGCAGATCCATTTCTTGTTTGTCCACCTGATCATGCTGGAAATTTAGAACATGCAGCAAATGTGATAGGCCAG
AGCAAGATGGTGATGCCTATGTTTTGGTGGATGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis