Browse Element(s) Details

Os.52941.1.S1_at

Description

gb:AK070030.1
DB_XREF= gi:32980054
TID=Os.52941.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037N07, full insert sequence.
FL= gb:AK070030.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g49060	11/11	amino acid transporter family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g49000	Os.45161.1.A1_x_at	2/11	2	+	29958098..29966763	retrotransposon protein, putative, unclassified
LOC_Os02g49000	OsAffx.17536.1.S1_at	1/11	2	+	29958098..29966763	retrotransposon protein, putative, unclassified
LOC_Os02g49000	OsAffx.16451.1.A1_x_at	1/11	2	+	29958098..29966763	retrotransposon protein, putative, unclassified
LOC_Os02g49000	OsAffx.8201.1.S1_x_at	1/11	2	+	29958098..29966763	retrotransposon protein, putative, unclassified
LOC_Os02g49000	OsAffx.22699.1.S1_x_at	1/11	2	+	29958098..29966763	retrotransposon protein, putative, unclassified
LOC_Os02g49010	NA	NA	2	+	29967219..29968833	hypothetical protein
LOC_Os02g49020	NA	NA	2	+	29969212..29969886	hypothetical protein
LOC_Os02g49030	NA	NA	2	+	29971431..29972734	tRNA synthetase class I family protein, putative
LOC_Os02g49040	OsAffx.24793.1.S1_at	11/11	2	+	29973929..29976865	Protein kinase domain containing protein
LOC_Os02g49040	Os.35524.1.S3_at	1/11	2	+	29973929..29976865	Protein kinase domain containing protein
LOC_Os02g49050	Os.48108.1.S1_at	11/11	2	+	29978690..29981759	Endomembrane protein 70 containing protein, expressed
LOC_Os02g49060	Os.52941.1.S1_at	11/11	2	+	29986082..29992199	amino acid transporter family protein, putative, expressed
LOC_Os02g49070	Os.11648.1.S1_at	11/11	2	+	29992395..29996914	zinc finger and C2 domain protein, putative, expressed
LOC_Os02g49080	Os.7117.2.S1_a_at	11/11	2	+	30005224..30009770	KH domain-containing protein, putative, expressed
LOC_Os02g49090	Os.26580.1.A1_at	10/11	2	+	30010129..30020066	IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os02g49090	OsAffx.23696.1.S1_x_at	1/11	2	+	30010129..30020066	IMP dehydrogenase/GMP reductase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006865	biological_process	amino acid transport
GO:0015800	biological_process	acidic amino acid transport
GO:0015802	biological_process	basic amino acid transport
GO:0015804	biological_process	neutral amino acid transport
GO:0005887	cellular_component	integral to plasma membrane
GO:0016020	cellular_component	membrane
GO:0015171	molecular_function	amino acid transporter activity
GO:0015172	molecular_function	acidic amino acid transporter activity
GO:0015175	molecular_function	neutral amino acid transporter activity
GO:0015359	molecular_function	amino acid permease activity
GO:0015399	molecular_function	primary active transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52941.1.S1_at--19--927	1	Chr02:29991273..29991654 (25 bp)	TCCTCGGCGGCTATCAGGTGTACTC	LOC_Os02g49060
Os.52941.1.S1_at--431--1017	1	Chr02:29991644..29991665 (22 bp)	TATCAGGTGTACTCGCAGCCAGTGT	LOC_Os02g49060
Os.52941.1.S1_at--835--199	1	Chr02:29991651..29991675 (25 bp)	ACTCGCAGCCAGTGTTCGCGGCGGT	LOC_Os02g49060
Os.52941.1.S1_at--791--477	1	Chr02:29991762..29991786 (25 bp)	GCTGCCGCGTGAACGTGTACAGGCT	LOC_Os02g49060
Os.52941.1.S1_at--919--257	1	Chr02:29991773..29991797 (25 bp)	AACGTGTACAGGCTGTGCTTCCGGA	LOC_Os02g49060
Os.52941.1.S1_at--538--845	1	Chr02:29991825..29991849 (25 bp)	TGGCCGTGTGGTTCCCCTACTTCAA	LOC_Os02g49060
Os.52941.1.S1_at--573--989	1	Chr02:29991842..29991866 (25 bp)	TACTTCAACCAGGTGGTCGGGCTGC	LOC_Os02g49060
Os.52941.1.S1_at--412--425	1	Chr02:29991906..29991930 (25 bp)	CCGTCGAGATGTACCTCGTGCAGAA	LOC_Os02g49060
Os.52941.1.S1_at--833--943	1	Chr02:29992026..29992050 (25 bp)	TCGGTGTGTTCTCCTCCAAGACCAG	LOC_Os02g49060
Os.52941.1.S1_at--362--557	1	Chr02:29992060..29992084 (25 bp)	GAAATGCATCAGCTCGATCAGCAAA	LOC_Os02g49060
Os.52941.1.S1_at--934--599	1	Chr02:29992145..29992169 (25 bp)	GAGAGCATTTATGTACAGATCGGTA	LOC_Os02g49060

Target Sequence

TCCTCGGCGGCTATCAGGTGTACTCGCAGCCAGTGTTCGCGGCGGTGGAGCGGCGGATGGGCGGCGCGGGGGCGGGCGTG
GTGGAGGTGGCGGTGCCGGCGGCGGTGGCGTGGCCGTCGCGGTGGCGGCGCGGCTGCCGCGTGAACGTGTACAGGCTGTG
CTTCCGGACGGCGTACGTGGCGGCGACGACGGCGCTGGCCGTGTGGTTCCCCTACTTCAACCAGGTGGTCGGGCTGCTCG
GCGCCTTCACCTTCTGGCCGCTGTCCATCCACTTCCCCGTCGAGATGTACCTCGTGCAGAAGAAGGTGGCGCCGTGGACG
CCGCGGTGGCTCGCCGTCCGCGCCTTCAGCGCCGCCTGCCTCGCCACCGGCGCCTTCGCCTCCGTCGGCTCCGCCGTCGG
TGTGTTCTCCTCCAAGACCAGCTAATAATTGAAATGCATCAGCTCGATCAGCAAATGAATCGAAGAAAGATGGTCTGTAA
ATATCAAAGGAAGTGTTAATTTGTTCTTGTATGGAGAGAGCATTTATGTACAGATCGGTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis