Browse Element(s) Details


Os.52945.1.S1_at

Description gb:AK070039.1
DB_XREF= gi:32980063
TID=Os.52945.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037B21, full insert sequence.
FL= gb:AK070039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0295011/11pentatricopeptide, putative, expressed
LOC_Os11g031903/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02900OsAffx.18648.1.S1_at1/1112+1062020..1067900retrotransposon protein, putative, unclassified
LOC_Os12g02910Os.24025.1.S1_s_at11/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02910Os.57150.1.S1_at8/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02920OsAffx.31556.1.S1_at11/1112+1080583..1081152hypothetical protein
LOC_Os12g02930OsAffx.31557.1.S1_at6/1112+1088401..1088841hypothetical protein
LOC_Os12g02930OsAffx.31558.1.S1_x_at1/1112+1088401..1088841hypothetical protein
LOC_Os12g02940OsAffx.31558.1.S1_x_at11/1112+1091580..1091984hypothetical protein
LOC_Os12g02940OsAffx.31557.1.S1_at1/1112+1091580..1091984hypothetical protein
LOC_Os12g02950Os.52945.1.S1_at11/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02950Os.52764.1.S1_x_at3/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02960OsAffx.19460.1.S1_at11/1112+1096484..1097350Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os12g02970OsAffx.19461.1.S1_at11/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_x_at7/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_at2/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02980Os.11718.1.S1_at11/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.11908.1.S1_s_at4/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.47730.1.S1_x_at1/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02980Os.47730.2.S1_x_at1/1112+1106406..1109538GDA1/CD39 family protein, expressed
LOC_Os12g02990OsAffx.7467.1.S1_at11/1112+1111362..1111955hypothetical protein
LOC_Os12g03000Os.31312.2.S1_x_at4/1112+1115674..1118933retrotransposon protein, putative, unclassified
LOC_Os12g03000Os.31312.5.S1_x_at4/1112+1115674..1118933retrotransposon protein, putative, unclassified
LOC_Os12g03010NANA12+1119567..1125722retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52945.1.S1_at--973--5511Chr12:1093116..1093140 (25 bp)
GAAAACCGGCTAGACATGTAGTGAT
LOC_Os12g02950
Os.52945.1.S1_at--478--751Chr12:1093101..1093125 (25 bp)
ATGTAGTGATGCCTGCACCTCTAAA
LOC_Os12g02950
Os.52945.1.S1_at--391--5092Chr07:4828483..4828951 (25 bp)
GCACCTCTAAAATCTACAGCATCGA
NONE
Os.52945.1.S1_at--410--2711Chr12:1093046..1093070 (25 bp)
AAGCTTAGAGCTTCACAGTGCAGGT
LOC_Os12g02950
Os.52945.1.S1_at--798--2092Chr12:1093016..1093040 (25 bp)
ACATCTGAATATCTGCCAGTCTCTT
LOC_Os12g02950
Os.52945.1.S1_at--465--2691Chr12:1092909..1092933 (25 bp)
AAGCTGTGATCATTGTTTCCTACAA
LOC_Os12g02950
Os.52945.1.S1_at--94--10671Chr12:1092893..1092917 (25 bp)
TTCCTACAACTGTCGCTTCAAGCAT
LOC_Os12g02950
Os.52945.1.S1_at--364--52Chr12:1092870..1092894 (25 bp)
ATTGTTGTCATTCCTTTTGCCTCCG
LOC_Os12g02950
Os.52945.1.S1_at--34--10292Chr12:1092855..1092879 (25 bp)
TTTGCCTCCGTCCAGATTTGTTTCT
LOC_Os12g02950
Os.52945.1.S1_at--91--6851Chr12:1092836..1092860 (25 bp)
GTTTCTGACAGTGTATCCATACTCA
LOC_Os12g02950
Os.52945.1.S1_at--328--2971Chr12:1092783..1092807 (25 bp)
AATGGTATTTGCTATGCCCTCTGAA
LOC_Os12g02950
Target Sequence 
GAAAACCGGCTAGACATGTAGTGATGCCTGCACCTCTAAAATCTACAGCATCGAGNTTCCAGGATGGCATAAGCTTAGAG
CTTCACAGTGCAGGTTGGAAACATCTGAATATCTGCCAGTCTCTTGCCCTTGAGTTTCACAATGCAAGTATGTATCCCCC
GGAAAAAAAAAANTAGAGTATGTACGGTAGTACAGTTGTTGGAATATAAAGCTGTGATCATTGTTTCCTACAACTGTCGC
TTCAAGCATTGTTGTCATTCCTTTTGCCTCCGTCCAGATTTGTTTCTGACAGTGTATCCATACTCAGATCAGAGCCTGAN
GTGATGCAGCAAGCAATGGTATTTGCTATGCCCTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis