Browse Element(s) Details


Os.52953.1.S1_at

Description gb:AK070099.1
DB_XREF= gi:32980123
TID=Os.52953.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042E14, full insert sequence.
FL= gb:AK070099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2609011/11GWT1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26030OsAffx.25229.1.S1_x_at10/113+14894316..14903035expressed protein
LOC_Os03g26044Os.23303.1.A1_at11/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_x_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26060OsAffx.13040.1.S1_at10/113+14912636..14914520hypothetical protein
LOC_Os03g26070OsAffx.25230.1.S1_at11/113+14915437..14916781hypothetical protein
LOC_Os03g26080Os.53762.1.S1_at11/113+14917235..14921065GDA1/CD39 family protein, expressed
LOC_Os03g26090Os.52953.1.S1_at11/113+14925421..14932055GWT1 family protein, expressed
LOC_Os03g26100OsAffx.13041.4.S1_x_at11/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.4.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_x_at6/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100Os.28110.1.S1_x_at1/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26120OsAffx.13042.1.S1_at10/113+14942489..14943389hypothetical protein
LOC_Os03g26130OsAffx.13043.1.S1_at11/113+14946361..14947502Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52953.1.S1_at--266--5551Chr03:14928962..14928986 (25 bp)
GAAACGGTGGTATCATCAGTCAGAA
LOC_Os03g26090
Os.52953.1.S1_at--1109--3831Chr03:14929507..14929531 (25 bp)
CTGATTGGTGTTTCCTTGGGTTACA
LOC_Os03g26090
Os.52953.1.S1_at--255--7671Chr03:14929524..14929548 (25 bp)
GGGTTACAATCTATTCTTCGACAAT
LOC_Os03g26090
Os.52953.1.S1_at--310--4771Chr03:14929600..14929705 (25 bp)
GCTGCATCTTTTTGGATTATGGCAA
LOC_Os03g26090
Os.52953.1.S1_at--800--8511Chr03:14929700..14929724 (25 bp)
TGGCAATCATTCTTGACAGCTATGT
LOC_Os03g26090
Os.52953.1.S1_at--225--251Chr03:14931574..14931598 (25 bp)
ATATCTATTCTCACACTAGCTGGGT
LOC_Os03g26090
Os.52953.1.S1_at--534--3111Chr03:14931646..14931670 (25 bp)
AATATGCTTGGTTCATTCCTTCTGG
LOC_Os03g26090
Os.52953.1.S1_at--501--91Chr03:14931660..14931830 (25 bp)
ATTCCTTCTGGCAAACATCCTAACT
LOC_Os03g26090
Os.52953.1.S1_at--93--3071Chr03:14931840..14931864 (25 bp)
AATCTCTCAGTTGACACACTCTCTG
LOC_Os03g26090
Os.52953.1.S1_at--808--3812Chr03:14931902..14931926 (25 bp)
CTCCTTTACTCTATGCATGATTGCT
LOC_Os03g26090
Os.52953.1.S1_at--202--4751Chr03:14931924..14931948 (25 bp)
GCTGCTTTAGCTCAGTTTTGCGGTA
LOC_Os03g26090
Target Sequence 
GAAACGGTGGTATCATCAGTCAGAATAAGGAAGGTGTTTATAGCATATTTGGTTACTGGGGTATGTACCTGATTGGTGTT
TCCTTGGGTTACAATCTATTCTTCGACAATAGTTCAAAAGGCAAGAGTAGGAGCAGTCAAGTGGTAAAAGTTTGGGTTCT
TGCTGCATCTTTTTGGATTATGGCAATCATTCTTGACAGCTATGTTGAAAGAGTTTCTCGACGAATGTGCAACTTTGCTT
ATGTTATGCTTGTATTTGGACAGAATTTTCAGGTTATATCTATTCTCACACTAGCTGGGTTTATTTCATATGAAAAGAAC
CTGGTTCTTGAAGATGCATTCAATCAAAATATGCTTGGTTCATTCCTTCTGGCAAACATCCTAACTGGTGTAGTAAATCT
CTCAGTTGACACACTCTCTGCCTCTTCCGGCACCGCCTTCATGATTTTGTTAGTATACTCCTTTACTCTATGCATGATTG
CTGCTTTAGCTCAGTTTTGCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis