Browse Element(s) Details


Os.5297.1.S1_at

Description gb:AK119798.1
DB_XREF= gi:37989421
TID=Os.5297.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Pollen specific protein C13 precursor (OJ1208D02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-H05, full insert sequence.
FL= gb:AK119798.1 gb:AK070069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2259011/11Pollen proteins Ole e I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22570Os.26719.1.S1_at11/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22570Os.52165.1.S1_at1/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22580OsAffx.30500.1.S1_at11/1110+11385169..11386483hypothetical protein
LOC_Os10g22580Os.57008.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22580OsAffx.32015.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22590Os.5297.1.S1_at11/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22590Os.3577.1.S1_x_at2/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22600OsAffx.20436.1.S1_x_at11/1110+11400208..11401173AP2 domain containing protein, expressed
LOC_Os10g22610Os.4183.1.S1_a_at1/1110+11411238..11411871hypothetical protein
LOC_Os10g22620OsAffx.31869.4.S1_x_at11/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.4.S1_at11/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.3.S1_s_at4/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.3.S1_x_at4/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.5.S1_x_at3/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620Os.48015.1.A1_at1/1110+11415726..11417070retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5297.1.S1_at--270--1291Chr10:11394448..11394472 (25 bp)
AGATCGAAATCCACTGGCGCCAAGA
LOC_Os10g22590
Os.5297.1.S1_at--918--2751Chr10:11394469..11394493 (25 bp)
AAGACATGCAGCTTCGAGGGCCAGA
LOC_Os10g22590
Os.5297.1.S1_at--902--531Chr10:11394517..11394541 (25 bp)
ATCCCTGTCAACGATGAGCATGAGC
LOC_Os10g22590
Os.5297.1.S1_at--288--5911Chr10:11394544..11394568 (25 bp)
GAGCTCTGCGAGTCTGTCCTTGTGA
LOC_Os10g22590
Os.5297.1.S1_at--648--9231Chr10:11394560..11394584 (25 bp)
TCCTTGTGAGCAGCCCGGACGCAAA
LOC_Os10g22590
Os.5297.1.S1_at--1123--8931Chr10:11394647..11394671 (25 bp)
TGACATCTAATGTTCGGTTGGCGAA
LOC_Os10g22590
Os.5297.1.S1_at--833--6611Chr10:11394663..11394687 (25 bp)
GTTGGCGAACGCTCTGGGCTTCCAG
LOC_Os10g22590
Os.5297.1.S1_at--263--1471Chr10:11394686..11394710 (25 bp)
AGAAGGATGCTCCTCTTGCTGCGTG
LOC_Os10g22590
Os.5297.1.S1_at--867--3811Chr10:11394704..11394728 (25 bp)
CTGCGTGCGCACAAATCCTCAAGAT
LOC_Os10g22590
Os.5297.1.S1_at--445--1391Chr10:11394807..11394831 (25 bp)
AGACTTCTATATACCTTTTACTGAG
LOC_Os10g22590
Os.5297.1.S1_at--716--1531Chr10:11394844..11394868 (25 bp)
AGCATCAGATGTTGCGTGCTTGATA
LOC_Os10g22590
Target Sequence 
AGATCGAAATCCACTGGCGCCAAGACATGCAGCTTCGAGGGCCAGACTGACCACACTGGCACCTACAACATCCCTGTCAA
CGATGAGCATGAGCACGAGCTCTGCGAGTCTGTCCTTGTGAGCAGCCCGGACGCAAAGTGTGGCAAGATTGTTGCTGGAC
GGGAGAGGGCTCCTGTCTTCCTCACCAACAACAATGGTGTGACATCTAATGTTCGGTTGGCGAACGCTCTGGGCTTCCAG
AAGGATGCTCCTCTTGCTGCGTGCGCACAAATCCTCAAGATGTACGAGGAAGTGGACGANCCGCGTTTGAAGGATGTGAG
TTATGTATCAATATTCGTACGTTGTTGAAATACTCTAAGAAGACTTCTATATACCTTTTACTGAGANCAAAACTATCAGC
ATCAGATGTTGCGTGCTTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis