Browse Element(s) Details


Os.52983.1.S1_x_at

Description gb:AK070264.1
DB_XREF= gi:32980288
TID=Os.52983.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047J07, full insert sequence.
FL= gb:AK070264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0805011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08000Os.27092.1.S1_at11/117+4048081..4052823Protein kinase domain containing protein, expressed
LOC_Os07g08010OsAffx.17740.1.S1_at2/117+4054637..4057367transposon protein, putative, Mutator sub-class
LOC_Os07g08030Os.4954.1.S1_a_at11/117+4066303..4068434ribose 5-phosphate isomerase, putative, expressed
LOC_Os07g08040OsAffx.28338.1.S1_x_at11/117+4069114..4074442expressed protein
LOC_Os07g08040OsAffx.6178.1.S1_at1/117+4069114..4074442expressed protein
LOC_Os07g08050Os.52022.1.S1_at11/117+4075804..4083822expressed protein
LOC_Os07g08050Os.52983.1.S1_x_at11/117+4075804..4083822expressed protein
LOC_Os07g08060Os.53121.1.S1_at11/117+4085754..4087271Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.13517.1.S1_at11/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.26963.1.A1_at1/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08080OsAffx.28340.4.S1_at11/117+4091235..4092423expressed protein
LOC_Os07g08090OsAffx.28340.1.S1_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.1.S1_x_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.4.S1_at1/117+4099166..4102756hypothetical protein
LOC_Os07g08100OsAffx.5250.1.S1_at11/117+4104836..4105876hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52983.1.S1_x_at--690--2311Chr07:4082781..4082805 (25 bp)
AAAGGACAAATTCCAGCTGCCCATG
LOC_Os07g08050
Os.52983.1.S1_x_at--526--3831Chr07:4082797..4082821 (25 bp)
CTGCCCATGCATTAGCTTCTATTTT
LOC_Os07g08050
Os.52983.1.S1_x_at--353--671Chr07:4082928..4082952 (25 bp)
ATGAAGACATCTCTCTCTTGTGCTG
LOC_Os07g08050
Os.52983.1.S1_x_at--866--8691Chr07:4082946..4082970 (25 bp)
TGTGCTGGCCGTTCAGATGATGCTA
LOC_Os07g08050
Os.52983.1.S1_x_at--119--971Chr07:4083007..4083031 (25 bp)
AGGACGATATCATCTCTGGCTTGGC
LOC_Os07g08050
Os.52983.1.S1_x_at--1053--6071Chr07:4083119..4083143 (25 bp)
GAGTTTGGCTGGCATTTCATCCCAT
LOC_Os07g08050
Os.52983.1.S1_x_at--290--251Chr07:4083173..4083197 (25 bp)
ATATGCTTCTCTTGCAACATCTGCA
LOC_Os07g08050
Os.52983.1.S1_x_at--868--5051Chr07:4083195..4083219 (25 bp)
GCAGCTGATGCATTCCATGTGATGA
LOC_Os07g08050
Os.52983.1.S1_x_at--286--1511Chr07:4083280..4083304 (25 bp)
AGCAGCGTTTCTTCTCAATATTGAT
LOC_Os07g08050
Os.52983.1.S1_x_at--822--51Chr07:4083299..4083323 (25 bp)
ATTGATGCCAATTTTTCTCTCTAAA
LOC_Os07g08050
Os.52983.1.S1_x_at--873--10851Chr07:4083798..4083822 (25 bp)
TTGGTTTTGTATCGAGCTTTTGGGC
LOC_Os07g08050
Target Sequence 
AAAGGACAAATTCCAGCTGCCCATGCATTAGCTTCTATTTTCAACAAAAACCTACACAATTCGGAATTCTCACATGAGAA
TAAACTGGATAAAGTGATTGATACTATTCTTGAGAGGTGTTTCTCAACAATATCAGTGCGAAGCAATATGAAGACATCTC
TCTCTTGTGCTGGCCGTTCAGATGATGCTAATTGCTCAGAGATCTTGTCTGGAAGCATTGAATCAAAGGACGATATCATC
TCTGGCTTGGCCTGGCTTGGCAAGGGATTGCTTATGAGAGGAGATGAAAAGGTGAAGGATGTTTCACTGTTTCTTCTTAA
ATGTCTATGCTCAGATCAGAGTTTGGCTGGCATTTCATCCCATCAGGAAGAACATGGTATCAGTGATTCATCATATGCTT
CTCTTGCAACATCTGCAGCTGATGCATTCCATGTGATGATGAGTGATTCAGAAGTTTGCCTGAATAAGAAGTTTCATGCA
AGAATAAAACCACTATATAAGCAGCGTTTCTTCTCAATATTGATGCCAATTTTTCTCTCTAAAATCAAGGAATCTACTGT
GATGACTACAAAATTGGTTTTGTATCGAGCTTTTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52983.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis