Browse Element(s) Details


Os.5300.1.S1_at

Description gb:AK111274.1
DB_XREF= gi:32996483
TID=Os.5300.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-G06, full insert sequence.
FL= gb:AK111274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g075509/11hAT dimerisation domain-containing protein, putative
LOC_Os12g187801/11hypothetical protein
LOC_Os12g187501/11hypothetical protein
LOC_Os03g289691/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07520OsAffx.16878.1.S1_at11/118+4213705..4214067hypothetical protein
LOC_Os08g07530OsAffx.29082.1.S1_at10/118+4219844..4221250hypothetical protein
LOC_Os08g07540Os.6294.1.S1_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540Os.6294.1.S1_s_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540OsAffx.16132.1.S1_at1/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07550Os.5300.1.S1_at9/118+4236865..4237329hAT dimerisation domain-containing protein, putative
LOC_Os08g07560Os.47130.4.A1_x_at3/118+4241850..4246651retrotransposon protein, putative, unclassified
LOC_Os08g07570OsAffx.32166.1548.S1_s_at11/118+4248177..4249987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07580OsAffx.29083.1.S1_at11/118+4251270..4252139hypothetical protein
LOC_Os08g07590OsAffx.16879.1.S1_at9/118+4257539..4258633hypothetical protein
LOC_Os08g07600Os.12318.1.S1_at11/118+4261939..4262602expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5300.1.S1_at--520--851Chr08:4236962..4236986 (25 bp)
ATGGCATCCTTCAATCCTATCGATT
LOC_Os08g07550
Os.5300.1.S1_at--363--7891Chr08:4237015..4237039 (25 bp)
GGTTAGCTTGCTCAGTTTTATCCAA
LOC_Os08g07550
Os.5300.1.S1_at--24--1351Chr08:4237056..4237080 (25 bp)
AGAGTTGTTACATCTTCCCTTTCAG
LOC_Os08g07550
Os.5300.1.S1_at--435--4311Chr08:4237073..4237097 (25 bp)
CCTTTCAGCTTACTCTCTTTATCAA
LOC_Os08g07550
Os.5300.1.S1_at--688--2271Chr08:4237134..4237158 (25 bp)
AAATCTGGTTGAGCTTTCCACCATG
LOC_Os08g07550
Os.5300.1.S1_at--1149--3671Chr08:4237147..4237171 (25 bp)
CTTTCCACCATGCTTGTTGCAACAA
LOC_Os08g07550
Os.5300.1.S1_at--233--2731Chr08:4237174..4237198 (25 bp)
AAGCACACCGCTTATGAATTTGTTT
LOC_Os08g07550
Os.5300.1.S1_at--674--31Chr08:4237212..4237236 (25 bp)
ATTGGTCTTAATTCTTCCTGTGGCA
LOC_Os08g07550
Os.5300.1.S1_at--1007--9571Chr08:4237224..4237248 (25 bp)
TCTTCCTGTGGCAACTGCTAGTGTA
LOC_Os08g07550
Os.5300.1.S1_at--1062--2611Chr08:4237393..4237417 (25 bp)
AAGCCATGGCTACCCGCAAAGTTAA
NONE
Os.5300.1.S1_at--998--1737Chr12:10874018..10874038 (21 bp)
ACCATTGTGCTACTGTTTGTACCTT
LOC_Os12g18780
Target Sequence 
ATGGCATCCTTCAATCCTATCGATTCATTTGCTGCTTATAACAAGGAAAACTTGGTTAGCTTGCTCAGTTTTATCCAAAG
GACTTCACAGAAACAGAGTTGTTACATCTTCCCTTTCAGCTTACTCTCTTTATCAATTTTGTTCGTAAAGATGAAAGGTT
TAAAAATGTGAAAAATCTGGTTGAGCTTTCCACCATGCTTGTTGCAACAAAGAAGCACACCGCTTATGAATTTGTTTACA
AGCTTCTCAAATTGGTCTTAATTCTTCCTGTGGCAACTGCTAGTGTAGAGAGGGTGTTTTCTTCCATGAATTATGTCAAG
ANCAAGNTAAGAAATAGAATGGGAGAACAATATTTGAATGTTGTTTAGTAACCTTTNTGGAGCGTGATCTTTTTGTGCAA
GTAACAGATGATGACATCATTTNTCGCTTCCAAGCCATGGCTACCCGCAAAGTTAAATTGTAATTTGTTTCAGTTTTCAT
GTAATTCATTCAAACCATTTTATAATTTAGACATTTTTACCATTGTGCTACTGTTTGTACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis