Browse Element(s) Details


Os.53000.1.S1_at

Description gb:AK070371.1
DB_XREF= gi:32980395
TID=Os.53000.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048E13, full insert sequence.
FL= gb:AK070371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0684010/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06800Os.15113.1.A1_at11/1112+3295525..3301801ZW18 protein, putative, expressed
LOC_Os12g06810Os.5167.1.S1_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.1.S1_x_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.2.S1_at8/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06820Os.50347.2.S1_at11/1112+3316600..3318414expressed protein
LOC_Os12g06830OsAffx.31622.1.S1_at11/1112+3320135..3321062Citrate binding protein precursor, putative
LOC_Os12g06840OsAffx.30847.1.S1_s_at11/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06840Os.53000.1.S1_at10/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06850Os.9290.1.A1_at11/1112+3324751..3327804transcription elongation factor, putative, expressed
LOC_Os12g06860OsAffx.4416.1.S1_at1/1112+3334325..3335123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06870Os.10039.1.S1_at4/1112+3337354..3343209Nucleoporin autopeptidase family protein, expressed
LOC_Os12g06880OsAffx.31623.1.S1_at11/1112+3346355..3346828hypothetical protein
LOC_Os12g06890Os.10039.1.S1_at11/1112+3347757..3351994Nucleoporin autopeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53000.1.S1_at--284--8011Chr12:3321532..3321556 (25 bp)
GGAGGCGGACATAGCAACACAACTA
LOC_Os12g06840
Os.53000.1.S1_at--428--2471Chr12:3321517..3321541 (25 bp)
AACACAACTAAATCGCCGCCGCGAG
LOC_Os12g06840
Os.53000.1.S1_at--1047--4511Chr12:3321500..3321524 (25 bp)
GCCGCGAGCGCAACCGCAGATGGAT
LOC_Os12g06840
Os.53000.1.S1_at--740--1611Chr12:3321442..3321461 (20 bp)
AGCTGATTATAATTTCTTGGCTTAA
LOC_Os12g06840
Os.53000.1.S1_at--146--10871NONE
TTGGCTTAAGCCATGTGTTAATTAT
NONE
Os.53000.1.S1_at--289--5271Chr12:3321347..3321371 (25 bp)
GAATGTTAATTCGATCGGTCGAACA
LOC_Os12g06840
Os.53000.1.S1_at--80--7771Chr12:3321322..3321346 (25 bp)
GGTGATGTACTACTAATTGTTACTG
LOC_Os12g06840
Os.53000.1.S1_at--903--6771Chr12:3321304..3321328 (25 bp)
GTTACTGGATTATCTCAGGGCAGAT
LOC_Os12g06840
Os.53000.1.S1_at--877--7591Chr12:3321287..3321311 (25 bp)
GGGCAGATAGGTTTATGTATCCATT
LOC_Os12g06840
Os.53000.1.S1_at--276--6911Chr12:3321271..3321295 (25 bp)
GTATCCATTATTAATCCATGTACTT
LOC_Os12g06840
Os.53000.1.S1_at--182--4331Chr12:3321256..3321280 (25 bp)
CCATGTACTTAATTTTACCCGATGA
LOC_Os12g06840
Target Sequence 
GGAGGCGGACATAGCAACACAACTAAATCGCCGCCGCGAGCGCAACCGCAGATGGATCAGAATGCGCGGGAAGAAGAAGG
AGGAGGATTAATTTGAGCTGATTATAATTTCTTGGCTTAAGCCATGTGTTAATTATTTTGTTTTTTTCTTCTTATGTTCT
TTTCTTCTTCTTTTTTTCTGGTTAAGAATGTTAATTCGATCGGTCGAACAGGTGATGTACTACTAATTGTTACTGGATTA
TCTCAGGGCAGATAGGTTTATGTATCCATTATTAATCCATGTACTTAATTTTACCCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis