Browse Element(s) Details


Os.53051.2.S1_x_at

Description gb:AK070993.1
DB_XREF= gi:32981016
TID=Os.53051.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078M16, full insert sequence.
FL= gb:AK070993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0127010/11START domain-containing protein, putative, expressed
LOC_Os09g020401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01210Os.51105.1.S1_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01210Os.51105.1.S1_s_at11/112+119391..121684amino acid transporter, putative, expressed
LOC_Os02g01220Os.35510.1.S1_at10/112+124645..127422Rhodanese-like domain containing protein, expressed
LOC_Os02g01230Os.47747.1.S1_at11/112+127079..130126Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os02g01240Os.5571.1.S1_at11/112+132984..135155Ankyrin-1, putative, expressed
LOC_Os02g01250Os.9579.1.S1_at11/112+135302..138097Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os02g01260OsAffx.19542.3.S1_x_at6/112+139660..143882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01270Os.53051.1.S1_at11/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01270Os.53051.2.S1_x_at10/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01280Os.20421.1.S1_at11/112+158674..163732RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os02g01290Os.23805.2.A1_at11/112+163662..164372expressed protein
LOC_Os02g01300OsAffx.11858.1.S1_at11/112+165491..167012Plant invertase/pectin methylesterase inhibitor family protein, expressed
LOC_Os02g01310Os.5658.1.S1_at11/112+168442..169528pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g01320OsAffx.11859.1.S1_at11/112+171034..171569hypothetical protein
LOC_Os02g01326Os.23534.1.A1_at11/112+175818..179370Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53051.2.S1_x_at--319--1771Chr02:151280..151304 (25 bp)
ACCTGATGGAGCTTGCGGCCATTGA
LOC_Os02g01270
Os.53051.2.S1_x_at--752--7431Chr02:151355..151482 (25 bp)
GTGTAGCCCAGGTAGCTGCTGAGAA
LOC_Os02g01270
Os.53051.2.S1_x_at--422--10191Chr02:151496..151620 (25 bp)
TTTGTTGCCAACATACAGATCCCTG
LOC_Os02g01270
Os.53051.2.S1_x_at--972--6371Chr02:151613..151637 (25 bp)
GATCCCTGGATCAACTCATTACAGC
LOC_Os02g01270
Os.53051.2.S1_x_at--842--3391Chr02:151634..151658 (25 bp)
CAGCTTGGTGATGTACTTCGTGACA
LOC_Os02g01270
Os.53051.2.S1_x_at--946--692Chr02:151708..151732 (25 bp)
ATGAGTTCCGCAATAGCAGGCTGAA
LOC_Os02g01270
Os.53051.2.S1_x_at--773--911Chr02:151725..151749 (25 bp)
AGGCTGAAGCTGATACCCTCTGTAC
LOC_Os02g01270
Os.53051.2.S1_x_at--274--4251NONE
CCGTGCTTCTTCCTACGAGGATGAT
NONE
Os.53051.2.S1_x_at--889--5091Chr02:152233..152257 (25 bp)
GCACGCACTGCAACTTATCAATCAT
LOC_Os02g01270
Os.53051.2.S1_x_at--1114--10311Chr02:152272..152296 (25 bp)
TTTCTAATTATTTCCGAGGCTCATA
LOC_Os02g01270
Os.53051.2.S1_x_at--248--5131Chr02:152350..152374 (25 bp)
GCAAAGTACAGCTGGTTTTCTTCTA
LOC_Os02g01270
Target Sequence 
ACCTGATGGAGCTTGCGGCCATTGACTGGTTTAAGGACAGCAAGCGTATGGATAACGTAGGCAGGCAGAAAGGCTGTGTA
GCCCAGGTAGCTGCTGAGAAAGGGATGCATACATTTGTTGCCAACATACAGATCCCTGGATCAACTCATTACAGCTTGGT
GATGTACTTCGTGACAAAGTCGCTGAAGAAGGGATCACTGCTGCAGCGATTCTTCGATGGGGATGATGAGTTCCGCAATA
GCAGGCTGAAGCTGATACCCTCTGTACCCAAGGGATCATGGATAGTGCGGCAGAGTGTAGGGAGCACGCCGTGCTTCTTC
CTACGAGGATGATCATTTGTCCAAGAAAACCAACTAAGCTAGCACCTCTCTCAACGCACGCACTGCAACTTATCAATCAT
TTATCTTCTTGTAATTTCTAATTATTTCCGAGGCTCATAGCAAGCTTTGTTTTTTTTCTTTTCATCTTTTTTTTTATCTC
GTTAAGTTGTTTGCAAAGTACAGCTGGTTTTCTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53051.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis