Browse Element(s) Details


Os.53066.1.S1_x_at

Description gb:AK070675.1
DB_XREF= gi:32980699
TID=Os.53066.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53066 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061B19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061B19, full insert sequence.
FL= gb:AK070675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5988011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59840Os.51558.1.S1_x_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840Os.51558.1.S1_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840OsAffx.1874.1.S1_at1/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59850Os.6002.1.S1_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59850Os.6002.3.S1_x_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59860Os.13245.1.S1_x_at11/111+34947082..34950777expressed protein
LOC_Os01g59870Os.13246.1.S1_at11/111+34953033..34955450Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein
LOC_Os01g59890Os.25241.1.S1_at10/111+34963004..34966495expressed protein
LOC_Os01g59900Os.8824.1.S1_at11/111+34966593..34969643expressed protein
LOC_Os01g59910Os.27162.1.A1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910Os.27162.1.A1_s_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910OsAffx.23861.1.S1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59920Os.12243.1.S1_at11/111+34973955..34977620cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g59930Os.12219.1.S1_at10/111+34978925..34982302oxidoreductase, FAD-binding family protein, expressed
LOC_Os01g59940OsAffx.23862.1.S1_at11/111+34985578..34986219hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53066.1.S1_x_at--10--1971Chr01:34961339..34961363 (25 bp)
ACTGGGCTCGTGTTCATACTTCAAA
LOC_Os01g59880
Os.53066.1.S1_x_at--62--4911Chr01:34961286..34961310 (25 bp)
GCTTCAGCGATTAATGGCCTTCACT
LOC_Os01g59880
Os.53066.1.S1_x_at--334--10811Chr01:34961159..34961183 (25 bp)
TTGTCGCCCAAAACTTTTCGGAGCA
LOC_Os01g59880
Os.53066.1.S1_x_at--462--2831Chr01:34960402..34960426 (25 bp)
AAGTTCTTCTAATGCTGCGTCATCT
LOC_Os01g59880
Os.53066.1.S1_x_at--118--8871Chr01:34960264..34960394 (25 bp)
TAAGGGCATTTTCAGTTAAGGGCAT
LOC_Os01g59880
Os.53066.1.S1_x_at--713--10491Chr01:34960249..34960273 (25 bp)
TTAAGGGCATGCGTCTCAGTCATTT
LOC_Os01g59880
Os.53066.1.S1_x_at--878--10291Chr01:34960227..34960251 (25 bp)
TTTCCTGGCGCAAACTCCTAATAAT
LOC_Os01g59880
Os.53066.1.S1_x_at--879--5871Chr01:34960101..34960217 (25 bp)
GAGCCCGTCAGAATATTTGTTGCCA
LOC_Os01g59880
Os.53066.1.S1_x_at--716--3131Chr01:34959917..34959941 (25 bp)
AATTTTCTGTTCATGTTATCCGACT
LOC_Os01g59880
Os.53066.1.S1_x_at--626--10431Chr01:34959902..34959926 (25 bp)
TTATCCGACTTTCTCCATGTATGTT
LOC_Os01g59880
Os.53066.1.S1_x_at--340--9751Chr01:34959878..34959902 (25 bp)
TAATTTCTTGAATGTTGGCTTTGAC
LOC_Os01g59880
Target Sequence 
ACTGGGCTCGTGTTCATACTTCAAACTGACAAACAAAAAAGGTTCTTTAACCGGCTTCAGCGATTAATGGCCTTCACTGG
GGAGGAAAAAATGAAGGGTTGTCGCCCAAAACTTTTCGGAGCAAAGGAGAATAAAGTCTCAAACAGAACAGACAAACCAA
GTTGCAACACCGGGAAGTTTGGTCCAAGTTCTTCTAATGCTGCGTCATCTTCCCCCCTAAGGGCATTTTCAGTTAAGGGC
ATGCGTCTCAGTCATTTCCTGGCGCAAACTCCTAATAATACAACAACTGAGCCCGTCAGAATATTTGTTGCCACCTGGAA
CGTTGGAGGAAAAGCACCTACAGCTGAGCTGAACCTGGATGATTTTCTTCCCCCTGATGATCATTCAGATATTTATGTTT
TGGGGTGGGTCTTTTATTGCCCTTTTCTTAATATACTAGACGTGGAAAATATTTTTTTTGTCAATTTTACTAAATTTTCT
GTTCATGTTATCCGACTTTCTCCATGTATGTTAATTTCTTGAATGTTGGCTTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53066.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis