Browse Element(s) Details


Os.53067.1.S1_at

Description gb:AK070676.1
DB_XREF= gi:32980700
TID=Os.53067.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063N13, full insert sequence.
FL= gb:AK070676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0340011/11Microtubule associated protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03350Os.35344.3.S1_x_at9/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350Os.35344.18.S1_x_at8/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350OsAffx.22940.5.S1_x_at2/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03360OsAffx.11874.1.S1_s_at11/112+1360465..1363694expressed protein
LOC_Os02g03360Os.13889.1.S1_at10/112+1360465..1363694expressed protein
LOC_Os02g03370Os.49238.1.S1_at10/112+1366149..1369039hypothetical protein
LOC_Os02g03380OsAffx.15220.1.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.2.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.5.S1_at9/112+1369986..1374150hypothetical protein
LOC_Os02g03380Os.13877.1.S1_at3/112+1369986..1374150hypothetical protein
LOC_Os02g03390OsAffx.24081.1.S1_at11/112+1375705..1376318hypothetical protein
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein
LOC_Os02g03440OsAffx.11876.1.S1_at10/112+1399613..1401222Sm protein, expressed
LOC_Os02g03450Os.5994.1.A1_at10/112+1402582..1404558Golgi SNARE 12 protein, putative, expressed
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0000911biological_processcytokinesis by cell plate formation
GO:0001578biological_processmicrotubule bundle formation
GO:0007020biological_processmicrotubule nucleation
GO:0031116biological_processpositive regulation of microtubule polymerization
GO:0051322biological_processanaphase
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53067.1.S1_at--1104--1471Chr02:1380034..1380058 (25 bp)
AGCAATGGCAGAGGCCTTGATCACA
LOC_Os02g03400
Os.53067.1.S1_at--800--9931Chr02:1379886..1379991 (25 bp)
TACGATGGTGATGGTCTCCTGGACA
LOC_Os02g03400
Os.53067.1.S1_at--11--831Chr02:1379876..1379900 (25 bp)
ATGGTCTCCTGGACATGCTGGAGGA
LOC_Os02g03400
Os.53067.1.S1_at--213--891Chr02:1379624..1379648 (25 bp)
AGGCCTCCGCCCAAGAACATCAAGA
LOC_Os02g03400
Os.53067.1.S1_at--1136--951Chr02:1379591..1379615 (25 bp)
AGGACGTTGTCTATGGGTGGCACTA
LOC_Os02g03400
Os.53067.1.S1_at--402--2731Chr02:1379523..1379547 (25 bp)
AAGCACGCCGAGCTTCCTCAAGTCA
LOC_Os02g03400
Os.53067.1.S1_at--839--9691Chr02:1379506..1379530 (25 bp)
TCAAGTCACCTATGTCAGCACGAAG
LOC_Os02g03400
Os.53067.1.S1_at--812--2291Chr02:1379467..1379491 (25 bp)
AAATGTTATTGTCACGCGCAGTTGA
LOC_Os02g03400
Os.53067.1.S1_at--700--3351Chr02:1379455..1379479 (25 bp)
CACGCGCAGTTGAGGAAGATGATTT
LOC_Os02g03400
Os.53067.1.S1_at--197--7051Chr02:1379295..1379319 (25 bp)
GTAAAAATGCTATGTTCCGAGTGAG
LOC_Os02g03400
Os.53067.1.S1_at--714--6691Chr02:1379282..1379306 (25 bp)
GTTCCGAGTGAGCACTTGTTGTTAA
LOC_Os02g03400
Target Sequence 
AGCAATGGCAGAGGCCTTGATCACAAAGGTAATTGCTTGGGAGAAGGAGAGGGGTGCCAAATTTGAGTACGATGGTGATG
GTCTCCTGGACATGCTGGAGGAGTACAACAATACAAGGAAGGAGAAAGAGCAGGAGAGAAAGAGACAAAGGGATCAGAGA
AGGATGCTGGGTCAGGGCACAGGGGAGTCGCCGGTGGTGAGGCCTCCGCCCAAGAACATCAAGAATGTAACGAGGACGTT
GTCTATGGGTGGCACTAGTACGGGCGGCAAGAAGGCGTCGGCATCGGTGTCGTCGAGGCCAAGCACGCCGAGCTTCCTCA
AGTCACCTATGTCAGCACGAAGGAGTGACGAGGGACAAATGTTATTGTCACGCGCAGTTGAGGAAGATGATTTGTTATAG
CCAATTGATAGAATATTATTTACAATAGAAAGTATTAGTATTAAAGTTTTTTTGTAGATTTTTTTATAGTTGTTTTTAAG
CCTTCTTTATTATAGAGACTTTAATGCAAAAGTTATATCTTGTGAAATGTAAAAATGCTATGTTCCGAGTGAGCACTTGT
TGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis