Browse Element(s) Details


Os.5307.1.S1_s_at

Description gb:AU174399
DB_XREF= gi:13165602
DB_XREF=AU174399
CLONE=S6256
TID=Os.5307.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5307 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567521.1 (A.thaliana) ATP-dependent Clp protease proteolytic subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1653011/11Clp protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16480OsAffx.31069.1.S1_at2/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480Os.56292.1.S1_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16480OsAffx.31069.1.S1_x_at1/111+9349227..9356178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16490NANA1+9358131..9359378retrotransposon protein, putative, unclassified
LOC_Os01g16500OsAffx.20387.1.S1_x_at1/111+9360524..9365811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g16510Os.4654.1.S1_at10/111+9367564..9370451expressed protein
LOC_Os01g16520Os.37842.1.S1_at11/111+9370534..9374978glutamyl-tRNA synthetase family protein, expressed
LOC_Os01g16530OsAffx.23276.1.S1_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.5307.1.S1_s_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.36108.2.S1_x_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16540Os.10190.1.S1_at11/111+9382980..9387394RUB-activating enzyme, putative, expressed
LOC_Os01g16550Os.37994.1.S1_at11/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_x_at9/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_at5/111+9390660..9393390expressed protein
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5307.1.S1_s_at--62--11Chr01:9376218..9376242 (25 bp)
AACGGCCCAAATATTTCAGTCCAAG
LOC_Os01g16530
Os.5307.1.S1_s_at--240--3971Chr01:9376050..9376074 (25 bp)
CGGTGGTGTCGTATCGGAGCTCAAA
LOC_Os01g16530
Os.5307.1.S1_s_at--413--151Chr01:9376006..9376030 (25 bp)
ATTACGCTAGATACAATCTCCCTGT
LOC_Os01g16530
Os.5307.1.S1_s_at--884--2231Chr01:9375994..9376018 (25 bp)
ACAATCTCCCTGTAAGTTGGTAATA
LOC_Os01g16530
Os.5307.1.S1_s_at--280--7831Chr01:9375969..9375993 (25 bp)
GGTCAGACACACGACATGCTTTGTA
LOC_Os01g16530
Os.5307.1.S1_s_at--501--6931Chr01:9375947..9375971 (25 bp)
GTAGTGCCATGGAGTAGCTGCCATT
LOC_Os01g16530
Os.5307.1.S1_s_at--941--9991Chr01:9375933..9375957 (25 bp)
TAGCTGCCATTCATTAGCTGGCCTG
LOC_Os01g16530
Os.5307.1.S1_s_at--1071--1611Chr01:9375918..9375942 (25 bp)
AGCTGGCCTGGTTGTAGAACATCGA
LOC_Os01g16530
Os.5307.1.S1_s_at--765--2491Chr01:9375901..9375925 (25 bp)
AACATCGAGCTGGATTGGCAATGCA
LOC_Os01g16530
Os.5307.1.S1_s_at--504--651Chr01:9375873..9375897 (25 bp)
ATGCAGTACACGCTGATACTTTTTT
LOC_Os01g16530
Os.5307.1.S1_s_at--1112--8591Chr01:9375820..9375844 (25 bp)
TGGTGCCTGATAACTTGTACGGTGG
LOC_Os01g16530
Target Sequence 
AACGGCCCAAATATTTCAGTCCAAGTGAAGCTGTGGATTATGGGATCATTGACAAGGTGCTGTACAATGAGAAAAGCCAA
GAAGACGGTGGTGTCGTATCGGAGCTCAAAAGATCAAATTTGATATAGTATTACGCTAGATACAATCTCCCTGTAAGTTG
GTAATAGGTCAGACACACGACATGCTTTGTAGTGCCATGGAGTAGCTGCCATTCATTAGCTGGCCTGGTTGTAGAACATC
GAGCTGGATTGGCAATGCAAATATGCAGTACACGCTGATACTTTTTTTTTTTTTNGATATGGGCTTTTTCCAATNTGGTG
CCTGATAACTTGTACGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5307.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis