Browse Element(s) Details


Os.53071.1.S1_at

Description gb:AK070696.1
DB_XREF= gi:32980720
TID=Os.53071.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023057L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057L12, full insert sequence.
FL= gb:AK070696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4587011/11F-box domain containing protein, expressed
LOC_Os05g455701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45830Os.18098.1.S1_at11/115+26461396..26468874expressed protein
LOC_Os05g45840Os.7325.1.S1_at10/115+26471741..26476763GTPase activating protein, putative, expressed
LOC_Os05g45850NANA5+26477844..26480492expressed protein
LOC_Os05g45860Os.51679.1.S1_at11/115+26487164..26490696Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os05g45870Os.53071.1.S1_at11/115+26492407..26495176F-box domain containing protein, expressed
LOC_Os05g45880OsAffx.27333.1.S1_at9/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45880Os.11760.1.S1_at1/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45890Os.19143.1.S1_at11/115+26508541..26513219tRNAHis guanylyltransferase family protein, expressed
LOC_Os05g45900OsAffx.4629.1.S1_at11/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45900Os.25117.1.A1_at1/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53071.1.S1_at--849--6852Chr05:26494576..26494600 (25 bp)
GTTTGCTTGTTCCTATGCAGGTATC
LOC_Os05g45870
Os.53071.1.S1_at--1039--4191Chr05:26494922..26494946 (25 bp)
CCCCTCTACAGTCAGGTTAGATGTT
LOC_Os05g45870
Os.53071.1.S1_at--905--7111Chr05:26494932..26494956 (25 bp)
GTCAGGTTAGATGTTCTGAAGCCCT
LOC_Os05g45870
Os.53071.1.S1_at--667--7771Chr05:26494963..26494987 (25 bp)
GGTGCCATGCCTTTGAAGTTTAGGT
LOC_Os05g45870
Os.53071.1.S1_at--1034--3131Chr05:26495008..26495032 (25 bp)
AATTATGTGGTGTTGCTTAAGCTAG
LOC_Os05g45870
Os.53071.1.S1_at--474--1571Chr05:26495027..26495051 (25 bp)
AGCTAGGTGTGGCTTGTTTCTTTAG
LOC_Os05g45870
Os.53071.1.S1_at--416--6831Chr05:26495042..26495066 (25 bp)
GTTTCTTTAGCTATAGGATGTACCT
LOC_Os05g45870
Os.53071.1.S1_at--538--751Chr05:26495059..26495083 (25 bp)
ATGTACCTGCTGTTTTAGGTCCTGT
LOC_Os05g45870
Os.53071.1.S1_at--365--10091Chr05:26495074..26495098 (25 bp)
TAGGTCCTGTGGTATTATTGCATGG
LOC_Os05g45870
Os.53071.1.S1_at--1039--51Chr05:26495090..26495114 (25 bp)
ATTGCATGGGTTGTGCTTTGTCAGT
LOC_Os05g45870
Os.53071.1.S1_at--832--4871Chr05:26495104..26495128 (25 bp)
GCTTTGTCAGTGTTCTAATGTCATG
LOC_Os05g45870
Target Sequence 
GTTTGCTTGTTCCTATGCAGGTATCACAGACTCGTATGAAGCATCACGTGATTTCTGAAGATTCCTCATATCTGAGGCAG
ATGCCAGGACACCGCCATGTCAACCTCAAGAATGTGAAGATCATTGGGTTTTGCTCTGCAAAGAGCATGGTAGAGCTGAC
TTGCCATATTATTGAGAATGCAACATCACTAGAATCCCTTACTCTAGACACAATATGTGATGATTATGAAAATCCTGATA
GGCTATCTGTTCACGAAATTGGTGAGTGCAGCCCCATATGTAGGCAAATGATCATGGAGGCCAAAAACGCGCTCTTGGCT
ATCGAAAGATACATTGTGGGGAAAGTCCCCTCTACAGTCAGGTTAGATGTTCTGAAGCCCTGCAGCTGGTGCCATGCCTT
TGAAGTTTAGGTGTTAAATTGTGGCGATGTTGAATTATGTGGTGTTGCTTAAGCTAGGTGTGGCTTGTTTCTTTAGCTAT
AGGATGTACCTGCTGTTTTAGGTCCTGTGGTATTATTGCATGGGTTGTGCTTTGTCAGTGTTCTAATGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis