Browse Element(s) Details


Os.53102.1.S1_s_at

Description gb:AK070831.1
DB_XREF= gi:32980854
TID=Os.53102.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063B21, full insert sequence.
FL= gb:AK070831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2100011/11Potassium transporter 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20980OsAffx.29952.1.S1_s_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20980Os.57557.1.S1_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20990Os.52425.1.S1_x_at11/119+12643733..12649073expressed protein
LOC_Os09g20990OsAffx.29953.1.S1_at11/119+12643733..12649073expressed protein
LOC_Os09g21000Os.53102.1.S1_s_at11/119+12661823..12666522Potassium transporter 12, putative, expressed
LOC_Os09g21010OsAffx.17812.1.S1_at5/119+12670658..12671023hypothetical protein
LOC_Os09g21020Os.31662.1.S2_at9/119+12676273..12681660retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g21020OsAffx.21754.1.S1_x_at1/119+12676273..12681660retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g21030NANA9+12683680..12684069hypothetical protein
LOC_Os09g21040OsAffx.24701.1.S1_at5/119+12684745..12685682expressed protein
LOC_Os09g21040OsAffx.13010.1.S1_x_at4/119+12684745..12685682expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53102.1.S1_s_at--731--10631Chr09:12662399..12662423 (25 bp)
TTCCCACGAGTTCCATCTCAGAAGA
LOC_Os09g21000
Os.53102.1.S1_s_at--901--9991Chr09:12662330..12662354 (25 bp)
TAGCTTCTGGATTCACATACCTCTT
LOC_Os09g21000
Os.53102.1.S1_s_at--574--311Chr09:12662314..12662338 (25 bp)
ATACCTCTTGGCACACGGTGACGTG
LOC_Os09g21000
Os.53102.1.S1_s_at--1012--3551Chr09:12662254..12662278 (25 bp)
CATCATCAATTACTTCTACGCGTTC
LOC_Os09g21000
Os.53102.1.S1_s_at--1016--8331Chr09:12662212..12662236 (25 bp)
GGCTGGAACCGCAACCTTGAAGGTC
LOC_Os09g21000
Os.53102.1.S1_s_at--500--5311Chr09:12662194..12662218 (25 bp)
GAAGGTCCCTCACTCGAACATTATG
LOC_Os09g21000
Os.53102.1.S1_s_at--453--8211Chr09:12662060..12662084 (25 bp)
GGAATCGTACACCAGCTGCTAGTTT
LOC_Os09g21000
Os.53102.1.S1_s_at--511--4831Chr09:12661984..12662008 (25 bp)
GCTCAGCATTTTAGTCCGCAGAATT
LOC_Os09g21000
Os.53102.1.S1_s_at--1136--5191Chr09:12661964..12661988 (25 bp)
GAATTGGCCTTATATGTGCTCACTT
LOC_Os09g21000
Os.53102.1.S1_s_at--667--9011Chr09:12661874..12661898 (25 bp)
TGCAATCTGAGTTGATCTCTGCCAC
LOC_Os09g21000
Os.53102.1.S1_s_at--1069--9491Chr09:12661859..12661883 (25 bp)
TCTCTGCCACCCTGATAAGTTTTAT
LOC_Os09g21000
Target Sequence 
TTCCCACGAGTTCCATCTCAGAAGAAGACCCCAGCTTGGAGTATGAGCTGGAGTCACTGAGAGAAGCCATAGCTTCTGGA
TTCACATACCTCTTGGCACACGGTGACGTGAGGGCGAGGAAGGAATCGTTCTTCACGAAGAAGTTCATCATCAATTACTT
CTACGCGTTCCTCAGGAGGAATTGCAGGGCTGGAACCGCAACCTTGAAGGTCCCTCACTCGAACATTATGCGTGTCGGGA
TGACATACATGGTGTGATTGGGGCTTTGCAAGATTATGTGTTAGTGCTGCAAGATTGTTCCTTTTTTTTTCTTTCTTTCT
TTTTTACCATGTATTGGATGGAATCGTACACCAGCTGCTAGTTTTAGGGGCTGTACTGCAGTGATGAGCAAAATCACTAC
TGCTGCTGGCCAACTGCTCAGCATTTTAGTCCGCAGAATTGGCCTTATATGTGCTCACTTTTCAGTGAATTTGTGCCAAG
TTGTTTATGTGGTATTCATGGAGATTGTATTTGTAGCAAGAGCAATGCAATCTGAGTTGATCTCTGCCACCCTGATAAGT
TTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53102.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis