Browse Element(s) Details


Os.53109.1.S1_at

Description gb:AK070856.1
DB_XREF= gi:32980879
TID=Os.53109.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064J22, full insert sequence.
FL= gb:AK070856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1355011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13490OsAffx.18377.1.S1_at4/1112+7571977..7574844hypothetical protein
LOC_Os12g13490OsAffx.18377.1.S1_x_at3/1112+7571977..7574844hypothetical protein
LOC_Os12g13500OsAffx.19650.1.S1_at11/1112+7580100..7580585hypothetical protein
LOC_Os12g13520OsAffx.14940.1.S1_x_at1/1112+7585029..7585565hypothetical protein
LOC_Os12g13530OsAffx.31727.1.S1_at11/1112+7589420..7591641hypothetical protein
LOC_Os12g13530OsAffx.9532.1.S1_x_at1/1112+7589420..7591641hypothetical protein
LOC_Os12g13540OsAffx.31728.1.S1_at11/1112+7597078..7597347hypothetical protein
LOC_Os12g13550Os.53109.1.S1_at11/1112+7599452..7604327NB-ARC domain containing protein, expressed
LOC_Os12g13560NANA12+7608254..7608580hypothetical protein
LOC_Os12g13570Os.23747.1.S1_s_at11/1112+7609711..7617485Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g13580OsAffx.7583.1.S1_at11/1112+7619064..7622173hypothetical protein
LOC_Os12g13590Os.11598.1.S1_at11/1112+7627909..7641698Exocyst complex component Sec10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53109.1.S1_at--893--5291Chr12:7603775..7603799 (25 bp)
GAAGGCTCCATAGGATTCGCTGCTC
LOC_Os12g13550
Os.53109.1.S1_at--417--9091Chr12:7603795..7603819 (25 bp)
TGCTCTCCGGTTTTTCTGTTTTGAC
LOC_Os12g13550
Os.53109.1.S1_at--834--4871Chr12:7603879..7603903 (25 bp)
GCTATTAGCACTTGATCCATGGGAA
LOC_Os12g13550
Os.53109.1.S1_at--952--691Chr12:7603908..7603932 (25 bp)
ATGAGGCCACACCTGTTGGACTTAA
LOC_Os12g13550
Os.53109.1.S1_at--316--8531Chr12:7603924..7603948 (25 bp)
TGGACTTAAACACCTCTTGTACCTC
LOC_Os12g13550
Os.53109.1.S1_at--579--1612Chr12:7603978..7604002 (25 bp)
AGCTGTTGCTTCTGCAGGATCTGAA
LOC_Os12g13550
Os.53109.1.S1_at--133--8511Chr12:7604011..7604035 (25 bp)
TGGCAAGTCTGCACTAGTCAAGGGT
LOC_Os12g13550
Os.53109.1.S1_at--998--3211Chr12:7604029..7604053 (25 bp)
CAAGGGTGTGTTCCATGATGCCGCT
LOC_Os12g13550
Os.53109.1.S1_at--987--8851Chr12:7604044..7604068 (25 bp)
TGATGCCGCTAATGCTCTCCAGAGT
LOC_Os12g13550
Os.53109.1.S1_at--115--6731Chr12:7604100..7604124 (25 bp)
GTTCTCTCTCTGATCACGTAAATTG
LOC_Os12g13550
Os.53109.1.S1_at--973--4872Chr12:7604278..7604302 (25 bp)
GCTTAGCCTAACACATGATCACCAA
LOC_Os12g13550
Target Sequence 
GAAGGCTCCATAGGATTCGCTGCTCTCCGGTTTTTCTGTTTTGACTCTAATAGGATGTCACACCTAGAGTTTGGGGTAGG
TGCTATGCCCCAGCTCAAGAGGCTGCTATTAGCACTTGATCCATGGGAATGGGATGAGGCCACACCTGTTGGACTTAAAC
ACCTCTTGTACCTCGAGGAAATACGAGTATTGACAGCATCAACAGCTGTTGCTTCTGCAGGATCTGAATCAATGAATGGC
AAGTCTGCACTAGTCAAGGGTGTGTTCCATGATGCCGCTAATGCTCTCCAGAGTCGCCCAGCATTTACCGTGCTCCCAAG
GATCCGTTCTCTCTCTGATCACGTAAATTGTTGTAAAATTATTATGGAAACAGTTGCATGTAAGTAGGATTTTTAGGGAA
TGTATATGTAATTGTTGTAGCAAGATTTGTTCTTGTTCCAACTGAACATGGTTGTTAATGTTCTTACTTGTAATTGTAAG
TTCTAATCTTACATCAAAAGGATGCTTAGCCTAACACATGATCACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis