Browse Element(s) Details


Os.53118.1.S1_at

Description gb:AK070902.1
DB_XREF= gi:32980925
TID=Os.53118.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069E09, full insert sequence.
FL= gb:AK070902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g016509/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01600OsAffx.28980.1.S1_at11/118+350768..354209glycoside hydrolase family 28 protein, putative
LOC_Os08g01610Os.18706.1.S1_x_at10/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_x_at7/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.18706.1.S1_at6/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_at3/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01620Os.7321.1.S1_at11/118+361414..364631Shwachman-Bodian-Diamond syndrome protein homolog, putative, expressed
LOC_Os08g01630Os.49890.1.S1_at11/118+365110..367507DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os08g01640Os.49986.1.S1_at11/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01640Os.52705.1.S1_at3/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01650Os.53118.1.S1_at9/118+374960..377639Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01660Os.7391.1.S1_x_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01660Os.7391.1.S1_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01670Os.5834.1.S1_at11/118+383315..384849pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g01680Os.23940.1.A1_at11/118+388883..393753Chromatin assembly factor 1 subunit B, putative, expressed
LOC_Os08g01690Os.51744.1.A1_at11/118+393788..395077transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53118.1.S1_at--345--9111Chr08:375508..375532 (25 bp)
TGCTGCTCTCTCGACCAATGGTTTA
LOC_Os08g01650
Os.53118.1.S1_at--563--7931Chr08:375340..375364 (25 bp)
GGATTACCTCTCCATTCTCTAAAAT
LOC_Os08g01650
Os.53118.1.S1_at--96--1351Chr08:375292..375316 (25 bp)
AGAGTCGTAGGCTGAGCTGCTGATT
LOC_Os08g01650
Os.53118.1.S1_at--781--31Chr08:375270..375294 (25 bp)
ATTGTGCTGGTTTCATGTGGGAGAC
LOC_Os08g01650
Os.53118.1.S1_at--616--2251Chr08:375217..375241 (25 bp)
AAATATCGTCCTGTGTGAAATCCCA
LOC_Os08g01650
Os.53118.1.S1_at--146--5591Chr08:375201..375225 (25 bp)
GAAATCCCAGGCTCTTTGATGATAC
LOC_Os08g01650
Os.53118.1.S1_at--708--9551Chr08:375189..375213 (25 bp)
TCTTTGATGATACTGCCTGGCTGCC
LOC_Os08g01650
Os.53118.1.S1_at--1080--2771NONE
AAGAGCACTCTTGTTACGCTGTATA
NONE
Os.53118.1.S1_at--476--9951NONE
TACGCTGTATATGAACTCCGGAGAA
NONE
Os.53118.1.S1_at--165--10811Chr08:375041..375065 (25 bp)
TTGTTTCCTTTGTTAGCTTTCTATG
LOC_Os08g01650
Os.53118.1.S1_at--550--10451Chr08:375011..375035 (25 bp)
TTAGTACTGCTCTCTTATCCTTATA
LOC_Os08g01650
Target Sequence 
TGCTGCTCTCTCGACCAATGGTTTAGTGACAAATGTTGTGACCTACTGGTTAATGATAGAAAATGTTGTAAAACAAGGGT
TGCTAGAAGAATTGGATGATTTATTTCTTCATATGGAGAAGAGTGGCTGTACTAAGTTATTTCACAAAGAGCAGGTATGC
AAGGCTGGGGATTACCTCTCCATTCTCTAAAATTAATCAAGAGAACTTCCCCCTGAAGAGTCGTAGGCTGAGCTGCTGAT
TGTGCTGGTTTCATGTGGGAGACACGTTCAACATATAAAGTTTATCCTGAAAAATATCGTCCTGTGTGAAATCCCAGGCT
CTTTGATGATACTGCCTGGCTGCCTGCTGTGGGGATCGTTTTTTGTTTCTTATGTGGGGATTGTAGGTATGAAGAGCACT
CTTGTTACGCTGTATATGAACTCCGGAGAAGTAAAAATAACCCAATTCCTATTATAGTTCTCTAATTTTGTTTCCTTTGT
TAGCTTTCTATGAAATGTTAGTACTGCTCTCTTATCCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis