Browse Element(s) Details


Os.53177.1.S1_s_at

Description gb:AK071212.1
DB_XREF= gi:32981235
TID=Os.53177.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086C11, full insert sequence.
FL= gb:AK071212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1051011/11expressed protein
LOC_Os11g116201/11ZmEBE-1 protein, putative
LOC_Os08g344001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10460NANA6+5385401..5386221hypothetical protein
LOC_Os06g10470NANA6+5387230..5388015Zinc finger, C2H2 type family protein
LOC_Os06g10480OsAffx.27554.1.S1_at9/116+5392540..5395907kinesin-related protein, putative
LOC_Os06g10490OsAffx.15353.1.S1_at11/116+5397648..5398311hypothetical protein
LOC_Os06g10500Os.5680.1.S1_at3/116+5398627..5405363kinesin like protein, putative, expressed
LOC_Os06g10510Os.53177.1.S1_s_at11/116+5408031..5408865expressed protein
LOC_Os06g10510Os.53177.1.S1_at11/116+5408031..5408865expressed protein
LOC_Os06g10520Os.8793.1.S1_at11/116+5419936..5426234pantothenate kinase family protein, expressed
LOC_Os06g10530Os.16164.1.S1_at11/116+5430535..5431121expressed protein
LOC_Os06g10540NANA6+5432460..5432783hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53177.1.S1_s_at--673--10551Chr06:5408597..5408621 (25 bp)
TTCTTGGTGTCGTACCAGTCGTCGT
LOC_Os06g10510
Os.53177.1.S1_s_at--1161--8711Chr06:5408604..5408628 (25 bp)
TGTCGTACCAGTCGTCGTTCCAGAG
LOC_Os06g10510
Os.53177.1.S1_s_at--402--6691Chr06:5408620..5408644 (25 bp)
GTTCCAGAGCTGGTGGTTCCCGCTG
LOC_Os06g10510
Os.53177.1.S1_s_at--661--9091Chr06:5408643..5408667 (25 bp)
TGCTCAGCCGCCGATGAGAATTGCA
LOC_Os06g10510
Os.53177.1.S1_s_at--323--4531Chr06:5408649..5408673 (25 bp)
GCCGCCGATGAGAATTGCAAAAGCT
LOC_Os06g10510
Os.53177.1.S1_s_at--619--10171Chr06:5408699..5408723 (25 bp)
TATAGCAGAGGCTTCTTGGTTAATC
LOC_Os06g10510
Os.53177.1.S1_s_at--414--6211Chr06:5408706..5408730 (25 bp)
GAGGCTTCTTGGTTAATCAGAGCTA
LOC_Os06g10510
Os.53177.1.S1_s_at--944--3411Chr06:5408723..5408747 (25 bp)
CAGAGCTAAGCTCGGTGACGATCGA
LOC_Os06g10510
Os.53177.1.S1_s_at--370--7771Chr06:5408736..5408760 (25 bp)
GGTGACGATCGAGCTATATATAATT
LOC_Os06g10510
Os.53177.1.S1_s_at--460--6033Chr08:21467248..21467273 (25 bp)
GAGATGGAGGGATGCCACTTGTTTA
LOC_Os08g34400
Os.53177.1.S1_s_at--1074--6358Chr11:6457976..6457998 (23 bp)
GATGCCACTTGTTTAATTTACTCTG
LOC_Os11g11620
Target Sequence 
TTCTTGGTGTCGTACCAGTCGTCGTTCCAGAGCTGGTGGTTCCCGCTGCTCAGCCGCCGATGAGAATTGCAAAAGCTCGT
GCATGTAAAACCATGGTGAAAATATAGCAGAGGCTTCTTGGTTAATCAGAGCTAAGCTCGGTGACGATCGAGCTATATAT
AATTGAGCACAAGGGCGGAGCTAGAGCGAGATGGAGGGATGCCACTTGTTTAATTTACTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53177.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis