Browse Element(s) Details


Os.53264.1.S1_x_at

Description gb:AK071672.1
DB_XREF= gi:32981695
TID=Os.53264.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107C12, full insert sequence.
FL= gb:AK071672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1079011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10770Os.50235.1.S1_a_at11/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770Os.50235.2.S1_at10/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770OsAffx.14035.1.S1_at1/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10760NANA2+5688749..5689589AP2 domain-containing transcription factor family protein, putative, expressed
LOC_Os02g10780Os.15304.1.A1_at11/112+5706636..5709119ids4, putative, expressed
LOC_Os02g10790Os.53264.1.S1_x_at11/112+5709733..5732172expressed protein
LOC_Os02g10790OsAffx.11980.1.S1_at9/112+5709733..5732172expressed protein
LOC_Os02g10800Os.4975.1.S1_at11/112+5736608..5738792Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os02g10810Os.9295.1.S1_at10/112+5740412..5742437expressed protein
LOC_Os02g10810Os.6721.1.S1_x_at1/112+5740412..5742437expressed protein
LOC_Os02g10820Os.47337.1.S1_at11/112+5744792..5748139expressed protein
LOC_Os02g10820Os.55842.1.S1_at1/112+5744792..5748139expressed protein
LOC_Os02g10830NANA2+5748604..5749500satase isoform I, putative
LOC_Os02g10840Os.6191.2.S1_x_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.1.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.2.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10850OsAffx.11982.1.S1_at11/112+5755371..5758098Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53264.1.S1_x_at--1054--6551Chr02:5729485..5729509 (25 bp)
GATTAAGTTTGAGCCACTGCCTTGC
LOC_Os02g10790
Os.53264.1.S1_x_at--300--4451Chr02:5729467..5729491 (25 bp)
GCCTTGCTCTTTCTGCACTTATTAA
LOC_Os02g10790
Os.53264.1.S1_x_at--46--8551Chr02:5729078..5729212 (25 bp)
TGGAGCTTCAGATCACCTATGGCGT
LOC_Os02g10790
Os.53264.1.S1_x_at--737--7051Chr02:5729037..5729061 (25 bp)
GTAACTTTTGTTTCTGATGCCTTAA
LOC_Os02g10790
Os.53264.1.S1_x_at--565--6351Chr02:5729022..5729046 (25 bp)
GATGCCTTAAGTACTTCCCATGAGA
LOC_Os02g10790
Os.53264.1.S1_x_at--809--432Chr01:40540553..40540668 (24 bp)
ATCTTTGTCATCTTCCGATTCTTCG
NONE
Os.53264.1.S1_x_at--665--6571Chr02:5728977..5729001 (25 bp)
GATTCTTCGTTCAGGCGTGATTTTC
LOC_Os02g10790
Os.53264.1.S1_x_at--785--211Chr02:5728789..5728813 (25 bp)
ATTTGTTGGTGTTGTGCGACTTGCA
LOC_Os02g10790
Os.53264.1.S1_x_at--1084--7291Chr02:5728776..5728800 (25 bp)
GTGCGACTTGCATGGGCAGTTCATT
LOC_Os02g10790
Os.53264.1.S1_x_at--217--1351Chr02:5728722..5728746 (25 bp)
AGAGATACTCTCACTAGTTCTTCGA
LOC_Os02g10790
Os.53264.1.S1_x_at--609--7031Chr02:5727760..5727784 (25 bp)
GTACACTGGCTACATGCACAAGTTG
LOC_Os02g10790
Target Sequence 
GATTAAGTTTGAGCCACTGCCTTGCTCTTTCTGCACTTATTAAATTGATGAGTCCCAGGGAGGTTAAGGATGTATTTTCA
TTGTTAAAAGACTGTGCAGCTGAAGTTAATGAAAATTCTAGCGTGGAGCTTCAGATCACCTATGGCGTTCTTTTTTCTCT
TGTAGTAACTTTTGTTTCTGATGCCTTAAGTACTTCCCATGAGAAACCATCTTTGTCATCTTCCGATTCTTCGTTCAGGC
GTGATTTTCATGAGCTGGTGATGAGGTCAGATAACAATTTGACTATTGAAGGATTTGTTGGTGTTGTGCGACTTGCATGG
GCAGTTCATTTGATGTTAACTCAAGATCGAAGCAGTGCAAGAGATACTCTCACTAGTTCTTCGAGAGATGTGACAGATAT
ATGGGCATGTCTGGAGATAATCTGTCGCCAGAATAGTTTTCAATTTTTGCAGGAACGTATTATGCAAACAGCTGCCTACA
AGAATGACGATGAGGACATTGTTTACATGTACACTGGCTACATGCACAAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53264.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis