Browse Element(s) Details


Os.53332.1.S1_at

Description gb:AK072040.1
DB_XREF= gi:32982063
TID=Os.53332.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105G22, full insert sequence.
FL= gb:AK072040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4728011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47240NANA1+27318809..27322045transposon protein, putative, unclassified
LOC_Os01g47250NANA1+27322692..27328847retrotransposon protein, putative, unclassified
LOC_Os01g47256Os.13615.2.S1_at11/111+27331109..27334886Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g47262OsAffx.11501.1.S1_at11/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.1.S1_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262OsAffx.11501.1.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_at1/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47270OsAffx.23697.1.S1_at11/111+27340681..27341796expressed protein
LOC_Os01g47270Os.41454.1.S1_s_at11/111+27340681..27341796expressed protein
LOC_Os01g47280Os.53332.1.S1_at11/111+27344773..27348483expressed protein
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53332.1.S1_at--271--8811Chr01:27347061..27347085 (25 bp)
TGATAAACACGGCTTCTTTCCACAT
LOC_Os01g47280
Os.53332.1.S1_at--617--4631Chr01:27347005..27347029 (25 bp)
GCGTTCATCAAACAATCACCTGTGT
LOC_Os01g47280
Os.53332.1.S1_at--848--3111Chr01:27346936..27346960 (25 bp)
AATTTAGGCCCAATTCGCTTTTGCT
LOC_Os01g47280
Os.53332.1.S1_at--966--3991Chr01:27346921..27346945 (25 bp)
CGCTTTTGCTTAACCACCGAATGTA
LOC_Os01g47280
Os.53332.1.S1_at--656--5411Chr01:27346881..27346905 (25 bp)
GAAGCGTGCAACTTGGTCGCCGCAA
LOC_Os01g47280
Os.53332.1.S1_at--130--2231Chr01:27346794..27346818 (25 bp)
ACAAGGGCTCGGCATGTTTTTGCGC
LOC_Os01g47280
Os.53332.1.S1_at--403--10711Chr01:27346775..27346799 (25 bp)
TTGCGCTGCTGTGTATTTAATTCTA
LOC_Os01g47280
Os.53332.1.S1_at--914--6212Chr05:18322729..18322833 (25 bp)
GATGGCGACCCAAGATCAGTTTGTT
NONE
Os.53332.1.S1_at--648--8751Chr01:27346674..27346698 (25 bp)
TGTACTTTGGTCACGCATAGCTTGT
LOC_Os01g47280
Os.53332.1.S1_at--688--291Chr01:27346658..27346682 (25 bp)
ATAGCTTGTGCCCTGTTCTAAAGGA
LOC_Os01g47280
Os.53332.1.S1_at--1141--6891Chr01:27346622..27346646 (25 bp)
GTATCGATCACTACCCTGGTTTGAA
LOC_Os01g47280
Target Sequence 
TGATAAACACGGCTTCTTTCCACATAGAAAGCTACTGAATTTCCCACTAAAACGAAGCGTTCATCAAACAATCACCTGTG
TGGACCAAAGCAATAATAGCATCGTCTCTTAACTAATGCCATTAAAATTTAGGCCCAATTCGCTTTTGCTTAACCACCGA
ATGTACATTAAACATCAAATGAAGCGTGCAACTTGGTCGCCGCAACAAATACAATCATCGCCATGCCGTCCAAGCTATGG
GTATCTATAGATACAATTATTTGGGGGACAAGGGCTCGGCATGTTTTTGCGCTGCTGTGTATTTAATTCTAGTCCGATGT
GCAACAGAGTGGGATTGATGGCGACCCAAGATCAGTTTGTTTACAGCCAATCTTGTTTAACCTTAGGTGTACTTTGGTCA
CGCATAGCTTGTGCCCTGTTCTAAAGGACACGTGTAATGGTATCGATCACTACCCTGGTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis