Browse Element(s) Details


Os.53350.1.S1_at

Description gb:AK072212.1
DB_XREF= gi:32982235
TID=Os.53350.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013164P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161A01, full insert sequence.
FL= gb:AK072212.1 gb:AK099065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g582109/11Uncharacterized LmbE-like protein, COG2120 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58160OsAffx.26653.1.S1_at10/114+34420813..34421922hypothetical protein
LOC_Os04g58170Os.18359.1.S1_at11/114+34423741..34425446fiber protein Fb34, putative, expressed
LOC_Os04g58180Os.32813.1.A1_at11/114+34430540..34436142WD-40 repeat family protein, putative, expressed
LOC_Os04g58190Os.15992.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58190OsAffx.4206.1.S1_at11/114+34435230..34437669Dof domain, zinc finger family protein, expressed
LOC_Os04g58200Os.12363.1.S1_at11/114+34443989..34445518Protochlorophyllide reductase A, chloroplast precursor, putative, expressed
LOC_Os04g58210Os.53350.1.S1_at9/114+34445870..34449567Uncharacterized LmbE-like protein, COG2120 containing protein, expressed
LOC_Os04g58220NANA4+34450328..34452578Sugar transporter family protein
LOC_Os04g58230NANA4+34453776..34455771Sugar transporter family protein
LOC_Os04g58240Os.7635.1.S1_s_at11/114+34458466..34462684expressed protein
LOC_Os04g58240OsAffx.4209.1.S1_at11/114+34458466..34462684expressed protein
LOC_Os04g58250Os.53193.1.S1_at11/114+34461561..34466002protein kinase family protein, putative, expressed
LOC_Os04g58270Os.46300.1.S1_at9/114+34471063..34472908hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53350.1.S1_at--1126--4871Chr04:34448707..34448731 (25 bp)
GCTTTGAGGCAATGGCTTCACACAA
LOC_Os04g58210
Os.53350.1.S1_at--1148--6591Chr04:34449119..34449143 (25 bp)
GATTGTTTGTCCTATTCTCAAGCTA
LOC_Os04g58210
Os.53350.1.S1_at--162--1751Chr04:34449200..34449224 (25 bp)
ACCTTCCGGCTCAGATTGTCAAATG
LOC_Os04g58210
Os.53350.1.S1_at--389--3031Chr04:34449221..34449245 (25 bp)
AATGCCTGTACATGCAGAGTGCCAG
LOC_Os04g58210
Os.53350.1.S1_at--23--8191Chr04:34449345..34449369 (25 bp)
GGAACCTTTGTGATTATATGCCCTT
LOC_Os04g58210
Os.53350.1.S1_at--918--6631Chr04:34449379..34449403 (25 bp)
GTTGTAGGCCATCGATTGTGTTCAT
LOC_Os04g58210
Os.53350.1.S1_at--296--6791Chr04:34449407..34449431 (25 bp)
GTTAGATTGGACCTCTGTATCCTCA
LOC_Os04g58210
Os.53350.1.S1_at--382--8771Chr04:34449422..34449446 (25 bp)
TGTATCCTCAGCTAGTTTCTCTTGC
LOC_Os04g58210
Os.53350.1.S1_at--82--151Chr04:34449519..34449543 (25 bp)
ATTACTATGCTGTCGCTCAAGCTGT
LOC_Os04g58210
Os.53350.1.S1_at--980--10251NONE
TTTGTCTTCTTTTTGGGCTTTATGG
NONE
Os.53350.1.S1_at--455--5871Chr04:34449640..34449664 (25 bp)
GAGCGGTACCATTTTACTCCTGAAA
NONE
Target Sequence 
GCTTTGAGGCAATGGCTTCACACAAAAGCCAGTGGGTTTGGTTCAGGAGATTGTTTGTCCTATTCTCAAGCTACACATAC
ATAAATGTGCTCCAAAAAATTTGAAGTTTGTTGTCGTGCCAAAGCAAGCACCTTCCGGCTCAGATTGTCAAATGCCTGTA
CATGCAGAGTGCCAGAGTGTAAGCGGGAAGCTTCTCTGAAGAAAGACAACAATGTTGACATTGGATCAGGAATTCGAAAG
ATACTGAAATGTGATGATGAAATGCAACAGTTTAGGAACCTTTGTGATTATATGCCCTTTATACTTGTGTTGTAGGCCAT
CGATTGTGTTCATAGAGTTAGATTGGACCTCTGTATCCTCAGCTAGTTTCTCTTGCTTGAAGAGTTATTGCCGTTGTTGG
ACGATCAATCTNTATTGCAGTGTTACACAAGGTAACTGATGAACTGATATTACTATGCTGTCGCTCAAGCTGTATTCAAG
CCAGACAATTTTGTCTTCTTTTTGGGCTTTATGGACTTGATTGCTAACTACTACAATTGTAGATTGAGAATTTGAGTTTT
GATCAAGAAGAGCGGTACCATTTTACTCCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis