Browse Element(s) Details


Os.53355.1.S1_s_at

Description gb:AK100703.1
DB_XREF= gi:32985912
TID=Os.53355.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114O09, full insert sequence.
FL= gb:AK100703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3499011/11ACT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed
LOC_Os02g34950Os.5253.1.S1_at8/112+20957948..20960810ATP-binding family protein, putative, expressed
LOC_Os02g34960OsAffx.2864.1.S1_at11/112+20960969..20962759pentatricopeptide, putative
LOC_Os02g34970Os.47735.1.S1_at11/112+20966957..20968222No apical meristem protein, expressed
LOC_Os02g34980OsAffx.12355.1.S1_at11/112+20975490..20975744hypothetical protein
LOC_Os02g34990Os.53355.1.S1_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.53355.1.S1_s_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990OsAffx.24581.1.S1_x_at10/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.45967.1.A1_at2/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g35000Os.30962.1.S1_at11/112+20988470..20991249Chaperone protein dnaJ 10, putative, expressed
LOC_Os02g35010OsAffx.12356.1.S1_at11/112+20996624..21002341mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os02g35020OsAffx.24582.1.S1_at11/112+21008921..21012083glycogenin-like starch initiation protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53355.1.S1_s_at--258--2551Chr02:20988113..20988137 (25 bp)
AACTGCGTGTGGCATATGGCAGAAA
LOC_Os02g34990
Os.53355.1.S1_s_at--20--4671Chr02:20988117..20988141 (25 bp)
GCGTGTGGCATATGGCAGAAAAAGA
LOC_Os02g34990
Os.53355.1.S1_s_at--966--6611Chr02:20988149..20988173 (25 bp)
GTTGTTGTATAGTCCATAAACCATA
LOC_Os02g34990
Os.53355.1.S1_s_at--594--10191Chr02:20988156..20988180 (25 bp)
TATAGTCCATAAACCATAAGGAGCT
LOC_Os02g34990
Os.53355.1.S1_s_at--653--3711Chr02:20988185..20988209 (25 bp)
CTACCAGTGTAGGAAATGAGAAAAA
LOC_Os02g34990
Os.53355.1.S1_s_at--261--3011Chr02:20988210..20988234 (25 bp)
AATGCTGGATCCATGGTGTTGGTTC
LOC_Os02g34990
Os.53355.1.S1_s_at--655--7971Chr02:20988216..20988240 (25 bp)
GGATCCATGGTGTTGGTTCTGTTCT
LOC_Os02g34990
Os.53355.1.S1_s_at--240--3511Chr02:20988221..20988245 (25 bp)
CATGGTGTTGGTTCTGTTCTGTGCA
LOC_Os02g34990
Os.53355.1.S1_s_at--1085--8811Chr02:20988226..20988250 (25 bp)
TGTTGGTTCTGTTCTGTGCAATGCA
LOC_Os02g34990
Os.53355.1.S1_s_at--78--7911Chr02:20988230..20988254 (25 bp)
GGTTCTGTTCTGTGCAATGCAGATT
LOC_Os02g34990
Os.53355.1.S1_s_at--868--6711Chr02:20988236..20988260 (25 bp)
GTTCTGTGCAATGCAGATTGCAGAA
LOC_Os02g34990
Target Sequence 
AACTGCGTGTGGCATATGGCAGAAAAAGAAATTGCTGTTGTTGTATAGTCCATAAACCATAAGGAGCTCTACCTACCAGT
GTAGGAAATGAGAAAAAAATGCTGGATCCATGGTGTTGGTTCTGTTCTGTGCAATGCAGATTGCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53355.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis