Browse Element(s) Details


Os.53363.1.S1_at

Description gb:AK072268.1
DB_XREF= gi:32982291
TID=Os.53363.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003A21, full insert sequence.
FL= gb:AK072268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5162011/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51580Os.7441.1.S1_at11/113+29467207..29469644Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51590OsAffx.25679.1.S1_at11/113+29471317..29472768hypothetical protein
LOC_Os03g51600Os.12692.1.S1_x_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.12692.1.S1_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.21762.2.S1_x_at2/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51610Os.15197.1.S2_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51610Os.15197.1.S1_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51620Os.53363.1.S1_at11/113+29494392..29500681early-responsive to dehydration protein, putative, expressed
LOC_Os03g51640Os.9036.1.S1_at10/113+29507217..29510153expressed protein
LOC_Os03g51650Os.11802.1.S1_at11/113+29511103..29516407expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53363.1.S1_at--309--1691Chr03:29494803..29494827 (25 bp)
ACCAAGAACTCTGTGACGCCGTGAA
LOC_Os03g51620
Os.53363.1.S1_at--562--5771Chr03:29494747..29494771 (25 bp)
GACGAGATGTGACAACTCTGCTAGT
LOC_Os03g51620
Os.53363.1.S1_at--794--10771Chr03:29494717..29494741 (25 bp)
TTGTTCCGTGTCTTGTTTGATTCCA
LOC_Os03g51620
Os.53363.1.S1_at--952--211Chr03:29494693..29494717 (25 bp)
ATTTGTAATCTACCATTCGCTCTGA
LOC_Os03g51620
Os.53363.1.S1_at--915--6951Chr03:29494628..29494652 (25 bp)
GTAGCTGCTTGATTAATCCGGAGAA
LOC_Os03g51620
Os.53363.1.S1_at--44--1971Chr03:29494572..29494596 (25 bp)
ACTGTGCAGATTACCCGAAGTCTCT
LOC_Os03g51620
Os.53363.1.S1_at--854--9511Chr03:29494542..29494566 (25 bp)
TCTCACTTTACCACCACGGATGATG
LOC_Os03g51620
Os.53363.1.S1_at--468--5631Chr03:29494512..29494536 (25 bp)
GACACAGATTCGTAGCATGGGCATC
LOC_Os03g51620
Os.53363.1.S1_at--947--7491Chr03:29494481..29494505 (25 bp)
GTGGATCAACTTGCTTTACCTTGCA
LOC_Os03g51620
Os.53363.1.S1_at--926--10191Chr03:29494420..29494444 (25 bp)
TATATCCAACTTTATGTGCTGCCCC
LOC_Os03g51620
Os.53363.1.S1_at--210--1691Chr03:29494398..29494422 (25 bp)
CCCAATGTTCCTCTTAACGTTGTAT
LOC_Os03g51620
Target Sequence 
ACCAAGAACTCTGTGACGCCGTGAAGGAAGTGACTGGGTCGATTCAGGAACATGCCGACGAGATGTGACAACTCTGCTAG
TATATATTGTTCCGTGTCTTGTTTGATTCCATTTGTAATCTACCATTCGCTCTGATGATGTGTGTAGCTTCGTTATATGC
TTATACTTAGGCCAAGTAGCTGCTTGATTAATCCGGAGAAAGCTCCTTGAATGGTTTAAGGGGGGGAACTAACTGTGCAG
ATTACCCGAAGTCTCTCCCTGTCTCACTTTACCACCACGGATGATGTGCATGACACAGATTCGTAGCATGGGCATCGAGC
TCGTGGATCAACTTGCTTTACCTTGCAAATTTGTGTACTTTGAAAAATTGGAATATATAACTGTATATCCAACTTTATGT
GCTGCCCCAATGTTCCTCTTAACGTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis