Browse Element(s) Details


Os.53369.1.S1_at

Description gb:AK072314.1
DB_XREF= gi:32982337
TID=Os.53369.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019A19, full insert sequence.
FL= gb:AK072314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5285011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52810Os.27898.1.A1_at11/112+32280722..32286221Remorin, C-terminal region family protein, expressed
LOC_Os02g52820Os.51673.1.S1_at11/112+32289451..32292822expressed protein
LOC_Os02g52830Os.51956.1.S1_at11/112+32294664..32298113Lipase family protein, expressed
LOC_Os02g52840Os.53448.1.S1_at10/112+32304930..32306315Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os02g52850Os.53369.1.S1_at11/112+32307084..32310123D-mannose binding lectin family protein, expressed
LOC_Os02g52860Os.8496.1.S1_at11/112+32313510..32317463Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g52870OsAffx.12618.1.S1_at10/112+32318605..32320085Zinc finger, C3HC4 type family protein
LOC_Os02g52880Os.10895.1.S1_at11/112+32320298..32324247expressed protein
LOC_Os02g52890OsAffx.3050.1.S1_at11/112+32329755..32330054hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53369.1.S1_at--736--11Chr02:32307655..32307679 (25 bp)
ATTACTTCCCGCTCATGGCGCTGGA
LOC_Os02g52850
Os.53369.1.S1_at--164--5091Chr02:32307469..32307493 (25 bp)
GCACCATGGAACTGTGGGAGCCACG
LOC_Os02g52850
Os.53369.1.S1_at--942--1691Chr02:32307451..32307475 (25 bp)
AGCCACGCGTGCAGTCGCTCGGGTT
LOC_Os02g52850
Os.53369.1.S1_at--632--3231Chr02:32307360..32307384 (25 bp)
CAAGCAAGCCATGGCGGGTTCCAAT
LOC_Os02g52850
Os.53369.1.S1_at--532--3971Chr02:32307255..32307279 (25 bp)
CGGTCCAAGATAGGGCGGCGCACAC
LOC_Os02g52850
Os.53369.1.S1_at--262--4591Chr02:32307238..32307262 (25 bp)
GCGCACACCGGCGAGAAGATTGTGT
LOC_Os02g52850
Os.53369.1.S1_at--898--4252Chr09:5820273..5820297 (25 bp)
CCGGCGAGAAGATTGTGTTGTTAGA
NONE
Os.53369.1.S1_at--49--333Chr09:5820306..5820330 (25 bp)
ATACGGTTGCATTGATCATTTTGGT
NONE
Os.53369.1.S1_at--592--3432Chr06:690028..690048 (21 bp)
CAGAGGGATTAATTTGTGCATTCGT
NONE
Os.53369.1.S1_at--849--211Chr02:32307151..32307175 (25 bp)
ATTTGTGCATTCGTGAGGTCTATAC
LOC_Os02g52850
Os.53369.1.S1_at--518--6152Chr06:690052..690302 (25 bp)
GAGGTCTATACAAATTTTGTCCTGT
NONE
Target Sequence 
ATTACTTCCCGCTCATGGCGCTGGAGGGGCACGAGGCGGGGCAGTACGCCGCGCTGGCCGACCCGCGGCTGGAGGGGAAG
GTGGTCGCCGGCGAGGTGGAGAGGGTGGTAAAGGTGGGGCTCTGCTGCCTCCACGAGGACCCGCAGCTGCGGCCGAGCAT
GGCGATGGTGGCCGGCATGCTCGAGGGCACCATGGAACTGTGGGAGCCACGCGTGCAGTCGCTCGGGTTCCTCCGGCTCT
ACGGCCGGGGGTTCGCCGGACCGGCCGACGGCTCGGGCGGCAGCGGCGGCGGCATCAAGCAAGCCATGGCGGGTTCCAAT
GGGGACCACACAAGGTCGGGGACGACGACGGTGACGACGATGAGCGGGTGGCCGTCGTACATGTCGTCGTCGCAGCTCTC
CGGTCCAAGATAGGGCGGCGCACACCGGCGAGAAGATTGTGTTGTTAGAGATAGATTATACGGTTGCATTGATCATTTTG
GTTGATTTGTAAACAGAGGGATTAATTTGTGCATTCGTGAGGTCTATACAAATTTTGTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis