Browse Element(s) Details


Os.5337.1.S1_at

Description gb:AK061726.1
DB_XREF= gi:32971744
TID=Os.5337.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B04, full insert sequence.
FL= gb:AK061726.1 gb:AK065856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g365207/11Ki1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36450Os.9513.1.S1_at11/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36450Os.9513.1.S2_a_at10/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36460Os.37915.1.S1_at10/119+21037643..21041112Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36470Os.56554.1.S1_at11/119+21045812..21049546retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g36480Os.11434.1.S1_at11/119+21050153..21053503XAP5 protein, expressed
LOC_Os09g36490OsAffx.30152.1.S1_s_at11/119+21054103..21055610expressed protein
LOC_Os09g36500Os.9138.1.S1_at11/119+21056064..21056955Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36510OsAffx.30153.2.S1_x_at11/119+21059113..21059642hypothetical protein
LOC_Os09g36520Os.5337.1.S1_at7/119+21060635..21062217Ki1 protein, putative, expressed
LOC_Os09g36530Os.54288.1.S1_at11/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36530OsAffx.13934.1.S1_at1/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36540OsAffx.5106.1.S1_at2/119+21069425..21077599retrotransposon protein, putative, unclassified
LOC_Os09g36550OsAffx.30154.1.S1_at9/119+21081998..21085571armadillo/beta-catenin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5337.1.S1_at--667--10051Chr09:21060868..21060892 (25 bp)
TAGTTTGTGTTGTTCGTGTTAGACA
LOC_Os09g36520
Os.5337.1.S1_at--358--151Chr09:21060824..21060848 (25 bp)
ATTATCATGCATGTGTTGGGCGTTC
LOC_Os09g36520
Os.5337.1.S1_at--912--10811Chr09:21060809..21060833 (25 bp)
TTGGGCGTTCGTGTGTGATTTAATT
LOC_Os09g36520
Os.5337.1.S1_at--83--291Chr09:21060772..21060796 (25 bp)
ATAGTGGTGAAATTGCTCGTGTACA
LOC_Os09g36520
Os.5337.1.S1_at--427--4791Chr09:21060758..21060782 (25 bp)
GCTCGTGTACAAAGGAATAATCGCA
LOC_Os09g36520
Os.5337.1.S1_at--25--371Chr09:21060742..21060766 (25 bp)
ATAATCGCAAAGTGCTCGTTTTGTT
LOC_Os09g36520
Os.5337.1.S1_at--39--3771Chr09:21060728..21060752 (25 bp)
CTCGTTTTGTTGTGATCGTTCGTAA
LOC_Os09g36520
Os.5337.1.S1_at--833--5291NONE
GAAGGCGAACCGATGGCGTTCACAA
NONE
Os.5337.1.S1_at--1021--851NONE
ATGGCGTTCACAAGTGGGCGCGAAT
NONE
Os.5337.1.S1_at--434--7291NONE
GTGCCCCGCGACAGTGACAGAGGAC
NONE
Os.5337.1.S1_at--501--1331NONE
AGAGGACGCGTGGACACACAGCGCA
NONE
Target Sequence 
TAGTTTGTGTTGTTCGTGTTAGACACNGTGATTTATGAATGATTTATTATCATGCATGTGTTGGGCGTTCGTGTGTGATT
TAATTGTTGAAATGTATATAGTGGTGAAATTGCTCGTGTACAAAGGAATAATCGCAAAGTGCTCGTTTTGTTGTGATCGT
TCGTAACGAGGGTAATGGAGAGGATCAAATTGGTANNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTCGGCAGATGCGGTAAACGAGAAGGCGAACCGATGGCGTTCACAAGTGGGCGCGAATGGAAGAAAGGAGCG
AAAATGGGAACGGTACTGGGACGGCTTCCCCGCGACCGCGTGCCCCGCGACAGTGACAGAGGACGCGTGGACACACAGCG
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis