Browse Element(s) Details


Os.53450.1.S1_at

Description gb:AK072708.1
DB_XREF= gi:32982731
TID=Os.53450.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142F24, full insert sequence.
FL= gb:AK072708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4089011/11Exopolygalacturonase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40840Os.47954.1.S1_at11/116+24358245..24362678microtubule associated protein family protein, putative, expressed
LOC_Os06g40850Os.56087.1.S1_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40850OsAffx.15866.1.S1_x_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40860OsAffx.28029.1.S1_at11/116+24368838..24371851pentatricopeptide, putative, expressed
LOC_Os06g40870OsAffx.15867.1.S1_at11/116+24372218..24374215expressed protein
LOC_Os06g40870Os.55285.1.S1_at10/116+24372218..24374215expressed protein
LOC_Os06g40880Os.49993.1.S1_at9/116+24378830..24381171Polygalacturonase family protein, expressed
LOC_Os06g40890Os.53450.1.S1_at11/116+24383028..24385067Exopolygalacturonase precursor, putative, expressed
LOC_Os06g40900NANA6+24385490..24387005retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g40910Os.41883.1.S1_at1/116+24387284..24387874Cytidine and deoxycytidylate deaminase zinc-binding region family protein
LOC_Os06g40920OsAffx.28030.2.S1_x_at11/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.1.S1_s_at11/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.1.S1_x_at5/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.3.S1_at1/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40930OsAffx.15868.1.S1_at11/116+24395609..24396039hypothetical protein
LOC_Os06g40940Os.26642.1.S1_a_at11/116+24398549..24405053Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g40940OsAffx.23425.1.S1_at1/116+24398549..24405053Glycine dehydrogenase, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53450.1.S1_at--766--9931Chr06:24384539..24384563 (25 bp)
TACGAGGACTCCGTGTCGCCGGTGA
LOC_Os06g40890
Os.53450.1.S1_at--610--8931Chr06:24384561..24384585 (25 bp)
TGACCGTGTCCAAGGTGTCCTACGA
LOC_Os06g40890
Os.53450.1.S1_at--1052--4591Chr06:24384666..24384690 (25 bp)
GCGACTCCAAGGTGTCCGTCAGGGA
LOC_Os06g40890
Os.53450.1.S1_at--739--7091Chr06:24384683..24384707 (25 bp)
GTCAGGGACGTCACCTTCAGGAACA
LOC_Os06g40890
Os.53450.1.S1_at--3--5271Chr06:24384853..24384877 (25 bp)
GAAGTCCACCGGGTGCCTCAAGGAG
LOC_Os06g40890
Os.53450.1.S1_at--586--1591Chr06:24384876..24384900 (25 bp)
AGCTCGCTTGCCTCTAATGGATTAT
LOC_Os06g40890
Os.53450.1.S1_at--457--9611Chr06:24384909..24384933 (25 bp)
TCATCATCGATCTCTTTGTGTGTGT
LOC_Os06g40890
Os.53450.1.S1_at--65--3691Chr06:24384922..24384946 (25 bp)
CTTTGTGTGTGTTCATCGTGTTTAA
LOC_Os06g40890
Os.53450.1.S1_at--825--271Chr06:24384971..24384995 (25 bp)
ATATGGATGTATCCGCGTGTGTTCC
LOC_Os06g40890
Os.53450.1.S1_at--219--4671Chr06:24384985..24385009 (25 bp)
GCGTGTGTTCCTTGATTTTGATCTT
LOC_Os06g40890
Os.53450.1.S1_at--493--771Chr06:24385018..24385042 (25 bp)
ATGTCCATATCCTTTCTTTCTGTAA
LOC_Os06g40890
Target Sequence 
TACGAGGACTCCGTGTCGCCGGTGACCGTGTCCAAGGTGTCCTACGACGGCGTCGTCATGGACCACGTCGACAACCCCAT
CATCATCGACCAGAAGTACTGCCCCAACAGCATCTGCACCAGCAAGGGCGACTCCAAGGTGTCCGTCAGGGACGTCACCT
TCAGGAACATCACCGGGTCGTCCAACACGCCGGCGGTCGTCCAGCTGCTCTGCTCCGGCAAGCTGCCGTGCAGCGGCGTC
GCGATGCAGGACGTCAGGGTGCTGTACGGCGGCAGCGACAAGAAGACCACGGCCGTCTGCGACCACGCGCTGGGGAAGTC
CACCGGGTGCCTCAAGGAGCTCGCTTGCCTCTAATGGATTATTAATTCGATCATCATCGATCTCTTTGTGTGTGTTCATC
GTGTTTAAGAGACAGATCGAGGTTTGGAGAGCATATGGATGTATCCGCGTGTGTTCCTTGATTTTGATCTTCCAAGTTAA
TGTCCATATCCTTTCTTTCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis