Browse Element(s) Details


Os.53465.1.S1_at

Description gb:AK072782.1
DB_XREF= gi:32982805
TID=Os.53465.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142C01, full insert sequence.
FL= gb:AK072782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0284011/11Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g030701/11Sodium/hydrogen exchanger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02810Os.12636.1.S1_at11/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810OsAffx.18642.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810Os.54274.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02820Os.38774.1.S1_s_at11/1112+1004448..1010142Cytidylyltransferase family protein, expressed
LOC_Os12g02830Os.34563.1.S1_at4/1112+1011301..1015757SNF7 family protein, expressed
LOC_Os12g02840Os.53465.1.S1_at11/1112+1017201..1020176Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g02850OsAffx.7465.1.S1_at11/1112+1036187..1036547hypothetical protein
LOC_Os12g02860NANA12+1039963..1041087retrotransposon protein, putative, unclassified
LOC_Os12g02870Os.47623.1.A1_at2/1112+1042559..1046052GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53465.1.S1_at--152--9132Chr12:1019701..1019725 (25 bp)
TGCTGGCGTCCAAGGACTTCCAGAC
LOC_Os12g02840
Os.53465.1.S1_at--419--7592Chr12:1019863..1019887 (25 bp)
GGGCACGACCGGGTGTATGATCATC
LOC_Os12g02840
Os.53465.1.S1_at--254--3552Chr12:1019884..1019908 (25 bp)
CATCGATCATCGGAGAATTTTTCTT
LOC_Os12g02840
Os.53465.1.S1_at--714--10572Chr12:1019904..1019928 (25 bp)
TTCTTTCTAGAATTGGTGACCGTTG
LOC_Os12g02840
Os.53465.1.S1_at--153--7372Chr12:1019919..1019943 (25 bp)
GTGACCGTTGAGATAGATGTAGGAA
LOC_Os12g02840
Os.53465.1.S1_at--919--7332Chr12:1019998..1020022 (25 bp)
GTGCAAAGCTTAAACATAGTTCTTG
LOC_Os12g02840
Os.53465.1.S1_at--205--9831Chr12:1020035..1020059 (25 bp)
TAAATAACCATACACTAGCATGTTG
LOC_Os12g02840
Os.53465.1.S1_at--29--6652Chr12:1020056..1020080 (25 bp)
GTTGTTAATCAAGCAGTCATCGTTG
LOC_Os12g02840
Os.53465.1.S1_at--439--5031Chr12:1020068..1020092 (25 bp)
GCAGTCATCGTTGTGATGCAACATT
LOC_Os12g02840
Os.53465.1.S1_at--265--3272Chr12:1020086..1020110 (25 bp)
CAACATTTTGTTATTTAGAGGGCCT
LOC_Os12g02840
Os.53465.1.S1_at--1011--7552Chr12:1020105..1020129 (25 bp)
GGGCCTGAGGATGAGAACAAATGCA
LOC_Os12g02840
Target Sequence 
TGCTGGCGTCCAAGGACTTCCAGACGACGGCGTCGGTGCTGGTGCTGCAGGCGTACGGGAGGCCGGCGGCAGTGGTGGGA
GCGGGAGCGGGAGCAATGTCGGTGGATTTTGGCGGCGACAGCGTGGCGATGGCGGAGAGGACAGCCAGTGGGCGTAGGCC
ATGGGCACGACCGGGTGTATGATCATCGATCATCGGAGAATTTTTCTTTCTAGAATTGGTGACCGTTGAGATAGATGTAG
GAATAGCTGATAATATGGTGTGGATAATTGCATATTATGGTATAAAATTTATACATAGTGCAAAGCTTAAACATAGTTCT
TGGAAAAATAAAGCTAAATAACCATACACTAGCATGTTGTTAATCAAGCAGTCATCGTTGTGATGCAACATTTTGTTATT
TAGAGGGCCTGAGGATGAGAACAAATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis