Browse Element(s) Details


Os.53475.1.A1_at

Description gb:AK072870.1
DB_XREF= gi:32982893
TID=Os.53475.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142A17, full insert sequence.
FL= gb:AK072870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0727010/11Sodium Bile acid symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07220Os.9938.1.S1_at11/1112+3548137..3551609expressed protein
LOC_Os12g07230OsAffx.31629.1.S1_at11/1112+3552653..3557399Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os12g07240OsAffx.19527.1.S1_at11/1112+3562173..3562925hypothetical protein
LOC_Os12g07250OsAffx.31630.1.S1_at11/1112+3564998..3565556hypothetical protein
LOC_Os12g07260Os.16889.1.S1_a_at11/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_x_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07270Os.53475.1.A1_at10/1112+3572432..3575996Sodium Bile acid symporter family protein, expressed
LOC_Os12g07280Os.50556.1.S1_at11/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07280OsAffx.13726.1.S1_x_at2/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07290Os.27585.1.S1_at11/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07290OsAffx.27834.1.S1_at1/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07300Os.10295.1.S1_at5/1112+3590141..3596478expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008508molecular_functionbile acid:sodium symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53475.1.A1_at--971--9411Chr12:3573362..3573383 (22 bp)
TCGGGTACACGACAGCAGCTATAGG
LOC_Os12g07270
Os.53475.1.A1_at--127--151Chr12:3572814..3572838 (25 bp)
ATTAGCAACTGCACATTTCTCCTCT
LOC_Os12g07270
Os.53475.1.A1_at--506--2011Chr12:3572766..3572790 (25 bp)
ACTCTCCGCTGTCATCATGAACATA
LOC_Os12g07270
Os.53475.1.A1_at--25--6931Chr12:3572720..3572744 (25 bp)
GTATGGCAATTTATGACACCGCCTG
LOC_Os12g07270
Os.53475.1.A1_at--522--2551Chr12:3572687..3572711 (25 bp)
AACGAAAACCGTTGACTCGCGTGAT
LOC_Os12g07270
Os.53475.1.A1_at--1046--5711Chr12:3572674..3572698 (25 bp)
GACTCGCGTGATGTATGACCTGCTC
LOC_Os12g07270
Os.53475.1.A1_at--130--10511Chr12:3572636..3572660 (25 bp)
TTAATCTCCTGTCATAGTCTGCTGT
LOC_Os12g07270
Os.53475.1.A1_at--467--2431Chr12:3572592..3572616 (25 bp)
AAAACCATGCCGTGTATATCCTCAA
LOC_Os12g07270
Os.53475.1.A1_at--329--4191Chr12:3572560..3572584 (25 bp)
CCCTTCCTGATGTCAACTTGTCAAG
LOC_Os12g07270
Os.53475.1.A1_at--251--8451Chr12:3572464..3572488 (25 bp)
TGGCCAAATCCGGAACACTCAATTG
LOC_Os12g07270
Os.53475.1.A1_at--448--3331NONE
CACTCAATTGCTGTCTCGAGGAATA
NONE
Target Sequence 
TCGGGTACACGACAGCAGCTATAGGTGNNTTCAAGGAAAGACAAAGGAGAGCGATATCCATTGAGGTAGGGATGCAGAAT
TCATCCTTAGGAGTAGTATTAGCAACTGCACATTTCTCCTCTTCCTTGGTCGCCTNGCCAGCTGCACTCTCCGCTGTCAT
CATGAACATAATGGGTAGCACATTAGGTCTTGTATGGCAATTTATGACACCGCCTGNTTCGAAGAACGAAAACCGTTGAC
TCGCGTGATGTATGACCTGCTCNTACTTTGTGTGGTTAATCTCCTGTCATAGTCTGCTGTAAGAAACATTAGAAACGTTA
AAACCATGCCGTGTATATCCTCAACTTTCAGCCCTTCCTGATGTCAACTTGTCAAGTAGGGATTGTACATAGTTTTGGAA
TGTTGATTTTCTGAACTTTTGCTGATATACAGTCTAAAATGCACATGTGGCCAAATCCGGAACACTCAATTGCTGTCTCG
AGGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53475.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis