Browse Element(s) Details


Os.53513.1.S1_at

Description gb:AK073035.1
DB_XREF= gi:32983058
TID=Os.53513.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148M13, full insert sequence.
FL= gb:AK073035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0978011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09740Os.51875.1.S1_at10/118+5622786..5626083F-box domain containing protein, expressed
LOC_Os08g09750Os.52859.1.S1_at11/118+5627002..5629876F-box domain containing protein, expressed
LOC_Os08g09760Os.18985.1.S1_at11/118+5631925..5636857F-box domain containing protein, expressed
LOC_Os08g09770Os.54759.1.S1_at2/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09770OsAffx.24785.1.S1_x_at1/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09780Os.53513.1.S1_at11/118+5646337..5649305expressed protein
LOC_Os08g09790OsAffx.15141.3.S1_s_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790OsAffx.15141.2.S1_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.50851.1.S1_at6/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.8747.1.S2_x_at1/118+5652383..5656315hypothetical protein
LOC_Os08g09800Os.55100.1.S1_at1/118+5657234..5663062hAT family dimerisation domain containing protein
LOC_Os08g09810NANA8+5666127..5670105hAT family dimerisation domain containing protein
LOC_Os08g09820OsAffx.28855.3.S1_x_at11/118+5671209..5673331hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53513.1.S1_at--266--5351Chr08:5648725..5648749 (25 bp)
GAAGTTGCAGTACCGTCATACATTA
LOC_Os08g09780
Os.53513.1.S1_at--627--6731Chr08:5648791..5648815 (25 bp)
GTTCTTTGTGGTGCATGATCGAAAA
LOC_Os08g09780
Os.53513.1.S1_at--512--10791Chr08:5648833..5648857 (25 bp)
TTGTTTTCTGACATATCCTCCAGGC
LOC_Os08g09780
Os.53513.1.S1_at--892--10651Chr08:5648859..5648883 (25 bp)
TTCCCGCCAGACCATGGTAATGTGA
LOC_Os08g09780
Os.53513.1.S1_at--429--6711Chr08:5648963..5648987 (25 bp)
GTTCTGAAGGGTAAGCATCTGCACT
LOC_Os08g09780
Os.53513.1.S1_at--526--6791Chr08:5649101..5649125 (25 bp)
GTTATCTCTAGCTTGAGGTCGGCTT
LOC_Os08g09780
Os.53513.1.S1_at--569--7191Chr08:5649118..5649142 (25 bp)
GTCGGCTTCTTCCTGAAACGATTTG
LOC_Os08g09780
Os.53513.1.S1_at--1144--2413Chr08:5649207..5649231 (25 bp)
AAAACGCTGTGGTTGCTGGATTCGA
LOC_Os08g09780
Os.53513.1.S1_at--1033--4711Chr08:5649221..5649245 (25 bp)
GCTGGATTCGATACTTGTGACATAA
LOC_Os08g09780
Os.53513.1.S1_at--1119--2411Chr08:5649245..5649269 (25 bp)
AAAACTTTGTACAGCGACGAGCCAT
LOC_Os08g09780
Os.53513.1.S1_at--1037--5771Chr08:5649260..5649284 (25 bp)
GACGAGCCATTACCAATGCGCATAT
LOC_Os08g09780
Target Sequence 
GAAGTTGCAGTACCGTCATACATTATTACTGTTTTTGTTAGATGGAAAGCATTTGGTTCACTTGATGTTCTTTGTGGTGC
ATGATCGAAAACCATAAACTAATATGTTTTGTTTTCTGACATATCCTCCAGGCCTTCCCGCCAGACCATGGTAATGTGAA
GCTAGAGGGTGGGACCAATAATATCTTATGATCTTGTTCAATATGATAATTTCGCTTTATCACATTGTATTTAGCAGGGT
TCTGAAGGGTAAGCATCTGCACTGATCATGCTGGGATTACAGAATATGTGATGCTTCTTTTGAGTGCATTGGAACTATGT
ATATATGGCTACCTTAACGCGAAAATGATCTTATCTAGTGGAATGATTTTAGCTATGTTATCTCTAGCTTGAGGTCGGCT
TCTTCCTGAAACGATTTGACGAGTTCTTTTTGCTTAATGCTATAACTGAAAGTGTAATATGTTCAATCTTCTATGTGTGG
TAAAAACGCTGTGGTTGCTGGATTCGATACTTGTGACATAAAAACTTTGTACAGCGACGAGCCATTACCAATGCGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis