Browse Element(s) Details


Os.53562.1.S1_s_at

Description gb:AK073299.1
DB_XREF= gi:32983322
TID=Os.53562.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029E14, full insert sequence.
FL= gb:AK073299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5360011/11Protein farnesyltransferase beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53560OsAffx.11589.1.S1_x_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.2.S1_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.1.S1_at5/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53580NANA1+31095323..310959493'-5' exonuclease family protein
LOC_Os01g53590OsAffx.21642.1.S1_s_at11/111+31097247..310998513'-5' exonuclease family protein
LOC_Os01g53600Os.53562.1.S1_s_at11/111+31101964..31106121Protein farnesyltransferase beta subunit, putative, expressed
LOC_Os01g53610Os.34170.1.S1_at11/111+31106241..31109574pentatricopeptide, putative, expressed
LOC_Os01g53620OsAffx.23776.1.S1_at11/111+31112951..31114867expressed protein
LOC_Os01g53620Os.9011.1.S1_at10/111+31112951..31114867expressed protein
LOC_Os01g53630Os.42170.1.S1_x_at10/111+31115825..31123367Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009934biological_processregulation of meristem organization
GO:0018342biological_processprotein prenylation
GO:0018344biological_processprotein geranylgeranylation
GO:0005953cellular_componentCAAX-protein geranylgeranyltransferase complex
GO:0005965cellular_componentprotein farnesyltransferase complex
GO:0004311molecular_functionfarnesyltranstransferase activity
GO:0004660molecular_functionprotein farnesyltransferase activity
GO:0004662molecular_functionCAAX-protein geranylgeranyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53562.1.S1_s_at--914--3571Chr01:31102923..31102947 (25 bp)
CATATTCCAGCAAAAGGCCTCCAGG
LOC_Os01g53600
Os.53562.1.S1_s_at--923--8851Chr01:31102895..31102919 (25 bp)
TGATGCTTGTGGTACGAGCTCTTCT
LOC_Os01g53600
Os.53562.1.S1_s_at--125--1371Chr01:31102541..31102565 (25 bp)
AGAGCAACCAAATAGGCCCACTGTT
LOC_Os01g53600
Os.53562.1.S1_s_at--837--2191Chr01:31102514..31102538 (25 bp)
ACAACATCGCGCTGCAGCAATACAT
LOC_Os01g53600
Os.53562.1.S1_s_at--711--3091Chr01:31102496..31102520 (25 bp)
AATACATCCTGCTTTGCGCACAGGT
LOC_Os01g53600
Os.53562.1.S1_s_at--789--5491Chr01:31102310..31102334 (25 bp)
GAACAGAGATCACTACCACTCGTGC
LOC_Os01g53600
Os.53562.1.S1_s_at--186--7331Chr01:31102289..31102313 (25 bp)
GTGCTACTGCCTGAGTGGTCTGTCA
LOC_Os01g53600
Os.53562.1.S1_s_at--591--9691Chr01:31102195..31102219 (25 bp)
TCAAACTTGCTAGAGCCGATCCATC
LOC_Os01g53600
Os.53562.1.S1_s_at--294--6371Chr01:31102178..31102202 (25 bp)
GATCCATCCGCTCTACAATGTTGTA
LOC_Os01g53600
Os.53562.1.S1_s_at--429--8911Chr01:31102078..31102102 (25 bp)
TGAGCTCTACAATGTTGCGCCTTAC
LOC_Os01g53600
Os.53562.1.S1_s_at--568--10351Chr01:31102014..31102038 (25 bp)
TTTTTACACTGACTGAACGGCCCCA
LOC_Os01g53600
Target Sequence 
CATATTCCAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGAAGCAGCATATTATGCTAAGTTT
GGATTTGATTTTATAGAGAAGAGCAACCAAATAGGCCCACTGTTCCACAACATCGCGCTGCAGCAATACATCCTGCTTTG
CGCACAGGTGCTGGATGGAGGGTTGAGGGATAAGCCTGGGAAGAACAGAGATCACTACCACTCGTGCTACTGCCTGAGTG
GTCTGTCAGTTAGCCAGTACAGCGCCATGGTTGATTNTGATGCGTGCCCCTTGCCGCAGCACGTGCTTGGTCCTTACTCA
AACTTGCTAGAGCCGATCCATCCGCTCTACAATGTTGTACTAGACAAATACCATACGGCCTATGAGTTCTTTTCAAGCTA
GTGATACAACTGTCTAGGACATGTATGATATGTATGAGCTCTACAATGTTGCGCCTTACAAGTTACAACTGTCTAAGACA
TGTATGATATTTCATTCTTTTTTACACTGACTGAACGGCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53562.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis