Browse Element(s) Details


Os.53568.1.S1_at

Description gb:AK073328.1
DB_XREF= gi:32983351
TID=Os.53568.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029N11, full insert sequence.
FL= gb:AK073328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3956011/11OTU-like cysteine protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39510OsAffx.29599.1.S1_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39510OsAffx.29599.1.S1_s_at11/118+24866655..24867637hypothetical protein
LOC_Os08g39520OsAffx.29600.2.S1_s_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39520OsAffx.29600.1.S1_at11/118+24867776..24869567hAT family dimerisation domain containing protein
LOC_Os08g39530Os.55426.1.S1_at4/118+24873097..24873312hypothetical protein
LOC_Os08g39540OsAffx.17420.1.S1_at11/118+24880065..24880589Zinc knuckle family protein
LOC_Os08g39550Os.47490.1.S1_at10/118+24882912..24884520Leucine Rich Repeat family protein, expressed
LOC_Os08g39560Os.53568.1.S1_at11/118+24890473..24893537OTU-like cysteine protease family protein, expressed
LOC_Os08g39570Os.52365.1.S1_at11/118+24898997..24906595Leucine Rich Repeat family protein, expressed
LOC_Os08g39580NANA8+24910422..24914534Tobamovirus movement protein containing protein

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53568.1.S1_at--734--5351Chr08:24892957..24892981 (25 bp)
GAAGATCCAATCCAAGTTCTATATG
LOC_Os08g39560
Os.53568.1.S1_at--406--8311Chr08:24893073..24893097 (25 bp)
TGGTAGGATTTGGTCTTAACCCATT
LOC_Os08g39560
Os.53568.1.S1_at--644--9231Chr08:24893098..24893122 (25 bp)
TCCTTCCTTTCCATGTATTTGCAAG
LOC_Os08g39560
Os.53568.1.S1_at--422--5671Chr08:24893142..24893166 (25 bp)
GACATTGACAATATCGCGCCGGTGA
LOC_Os08g39560
Os.53568.1.S1_at--558--4731Chr08:24893179..24893203 (25 bp)
GCTGTGATCTAGACATTGCTTTTCT
LOC_Os08g39560
Os.53568.1.S1_at--588--1711Chr08:24893224..24893248 (25 bp)
ACCACTCTGATCAACCTTGTCTATA
LOC_Os08g39560
Os.53568.1.S1_at--76--8311Chr08:24893259..24893283 (25 bp)
GGCTTTGTGTTCAGGATCCAGGCAT
LOC_Os08g39560
Os.53568.1.S1_at--794--10111Chr08:24893321..24893345 (25 bp)
TATGTTTCTCGATGTGAATCTGCTG
LOC_Os08g39560
Os.53568.1.S1_at--855--6631Chr08:24893365..24893389 (25 bp)
GTTGTTATCCACACTCTAGTAATGC
LOC_Os08g39560
Os.53568.1.S1_at--1153--5231Chr08:24893435..24893459 (25 bp)
GAATCCTGCTTGGTTAGTTAATACA
LOC_Os08g39560
Os.53568.1.S1_at--766--4471Chr08:24893488..24893512 (25 bp)
GCCTGTAACTTACTGCAATATCCTG
LOC_Os08g39560
Target Sequence 
GAAGATCCAATCCAAGTTCTATATGATGGTTTTGCTCATTATGATGCTGTACAGATTCCAGCAAAAAAATGCTCCAGAGA
GATGACTTCTGAATTTTTGAAGTTTCAAGGTTCAAATGGTAGGATTTGGTCTTAACCCATTTCCTTCCTTTCCATGTATT
TGCAAGTATCGAAGTTCTGGTGGTTGACATTGACAATATCGCGCCGGTGAGAGTGAAGACTAGCTGTGATCTAGACATTG
CTTTTCTTGTTAAAAGAAGCAAAATCCACCACTCTGATCAACCTTGTCTATATTCTNCAAATGGCTTTGTGTTCAGGATC
CAGGCATAGATTCCTGAATCGAGATGGAAATAGATGACAAGGNCATATGTTTCTCGATGTGAATCTGCTGAANGAGCCGA
AACTGNATNGTTGTTATCCACACTCTAGTAATGCTTCTGGNNAAACGTGAGACAAGGCAGCATAAGCNNATGGATGATTG
AATCCTGCTTGGTTAGTTAATACACTGATTGTAGGCACATGTAAGGGTGTAAGCCTGTAACTTACTGCAATATCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis