Browse Element(s) Details


Os.53580.1.S1_at

Description gb:AK073399.1
DB_XREF= gi:32983422
TID=Os.53580.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044O15, full insert sequence.
FL= gb:AK073399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3997011/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39920Os.55181.1.S1_at11/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39920OsAffx.19468.2.S1_at1/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39930Os.12654.1.S1_at11/119+22902539..22904349Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os09g39940Os.21629.1.S1_at11/119+22907376..22908312Plastocyanin-like domain containing protein, expressed
LOC_Os09g39950Os.50339.1.S1_at11/119+22908515..22909225Pollen-specific protein C13 precursor, putative, expressed
LOC_Os09g39960Os.52791.1.S1_at11/119+22911086..22916239Dynamin-related protein 1C, putative, expressed
LOC_Os09g39970Os.53580.1.S1_at11/119+22916723..22925111Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os09g39980Os.18292.1.S1_at4/119+22924985..22928249ubiquitin family protein, putative, expressed
LOC_Os09g40000Os.5443.1.S1_x_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.5443.1.S1_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49143.1.S1_at10/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49645.1.S1_at10/119+22933510..22938704expressed protein
LOC_Os09g40010Os.31312.2.S1_x_at2/119+22948956..22952110retrotransposon protein, putative, unclassified
LOC_Os09g40010Os.31312.5.S1_x_at2/119+22948956..22952110retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53580.1.S1_at--588--6471Chr09:22918024..22918048 (25 bp)
GATACACAAGCCTCCAGGATCGAGT
LOC_Os09g39970
Os.53580.1.S1_at--575--7751Chr09:22918064..22918088 (25 bp)
GGTGTTGTTTACGAGTTCTTGTCTG
LOC_Os09g39970
Os.53580.1.S1_at--62--7971Chr09:22918090..22918114 (25 bp)
GGATCATTCACATCCTCAGTCTGAT
LOC_Os09g39970
Os.53580.1.S1_at--1157--4451Chr09:22918171..22918195 (25 bp)
GCCTGCCACTAAACTAGTTACCTTT
LOC_Os09g39970
Os.53580.1.S1_at--889--5331Chr09:22918217..22918241 (25 bp)
GAAGTTTGTATCTCGCAGCACAGTG
LOC_Os09g39970
Os.53580.1.S1_at--244--6691Chr09:22918253..22918277 (25 bp)
GTTGCCTTTGGACTGATAAACACGA
LOC_Os09g39970
Os.53580.1.S1_at--56--4631Chr09:22918320..22918344 (25 bp)
GCGAGGATTGTCACTCTGTCATGAA
LOC_Os09g39970
Os.53580.1.S1_at--680--2891Chr09:22918343..22918367 (25 bp)
AAGGTAGTTTCCGAGGTCTATGATC
LOC_Os09g39970
Os.53580.1.S1_at--979--10171Chr09:22918380..22918404 (25 bp)
TTAGAGATCGTAACCGTTTCCACCA
LOC_Os09g39970
Os.53580.1.S1_at--980--10691Chr09:22918426..22918450 (25 bp)
TTGCCTGGACTACTGGTAGCACAGT
LOC_Os09g39970
Os.53580.1.S1_at--1152--3191Chr09:22918456..22918480 (25 bp)
CAATGTCCCCAGTTTCTTATGTTAA
LOC_Os09g39970
Target Sequence 
GATACACAAGCCTCCAGGATCGAGTGTTGTCGAACTTGATGGTGTTGTTTACGAGTTCTTGTCTGGGGATCATTCACATC
CTCAGTCTGATCAGATATATGCAATGCTTGATGAGATAGGCAAAACCTCGAGCCTCAAAGGGCACAAGCCTGCCACTAAA
CTAGTTACCTTTGACATTGATGAGGAGGACAAAGAAGTTTGTATCTCGCAGCACAGTGAGAAGCTGGCAGTTGCCTTTGG
ACTGATAAACACGAGGAGAGGGGCTGTTATCCGAATAGTGAAAAACTTGAGAATCTGCGAGGATTGTCACTCTGTCATGA
AGGTAGTTTCCGAGGTCTATGATCGAGTGATAGTTGTTAGAGATCGTAACCGTTTCCACCACTTCAAAAGTGGTTCTTGT
TCTTGCCTGGACTACTGGTAGCACAGTGACAACAATGTCCCCAGTTTCTTATGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis