Browse Element(s) Details


Os.53604.1.S1_at

Description gb:AK073529.1
DB_XREF= gi:32983552
TID=Os.53604.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53604 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for lipoxygenase L-2
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence.
FL= gb:AK073529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5286011/11Lipoxygenase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52820NANA3+30239329..30242470retrotransposon protein, putative, unclassified
LOC_Os03g52830NANA3+30243651..30246166FATC domain containing protein, expressed
LOC_Os03g52840Os.51552.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os03g52840Os.12148.1.S1_at11/113+30250173..30254803Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os03g52850OsAffx.3590.1.S1_x_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52850OsAffx.3590.1.S1_at11/113+30256371..30257847hypothetical protein
LOC_Os03g52860Os.53604.1.S1_at11/113+30266016..30269519Lipoxygenase 2, putative, expressed
LOC_Os03g52870Os.49820.1.S1_at11/113+30270026..30272200transducin family protein, putative, expressed
LOC_Os03g52880OsAffx.28901.3.S1_at11/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.24626.1.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52880OsAffx.28901.2.S1_x_at1/113+30276579..30279144transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g52890OsAffx.25692.1.S1_at11/113+30282752..30283147hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_x_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_x_at8/113+30285144..30289720hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53604.1.S1_at--3--1471Chr03:30268976..30269000 (25 bp)
AGAAGGTGTTCGTCCGGACAATCAC
LOC_Os03g52860
Os.53604.1.S1_at--590--9411Chr03:30268985..30269009 (25 bp)
TCGTCCGGACAATCACCAAGCAGAT
LOC_Os03g52860
Os.53604.1.S1_at--1139--3071Chr03:30268994..30269018 (25 bp)
CAATCACCAAGCAGATGCAGGCCAT
LOC_Os03g52860
Os.53604.1.S1_at--317--9511Chr03:30269027..30269051 (25 bp)
TCTCGCTGCTGGAGATCCTGTCCAA
LOC_Os03g52860
Os.53604.1.S1_at--739--6412Chr03:30269318..30269342 (25 bp)
GATCTCCATCTCATCAGATGAGGCT
LOC_Os03g52860
Os.53604.1.S1_at--970--4551Chr03:30269354..30269378 (25 bp)
GCGCCAGCGTGGACAAGAGTAGTTT
LOC_Os03g52860
Os.53604.1.S1_at--57--5611Chr03:30269365..30269389 (25 bp)
GACAAGAGTAGTTTTACGGTGGTCT
LOC_Os03g52860
Os.53604.1.S1_at--1145--2971Chr03:30269411..30269435 (25 bp)
CAATAATTGCCATGACACCTACACC
LOC_Os03g52860
Os.53604.1.S1_at--103--3351Chr03:30269426..30269450 (25 bp)
CACCTACACCCGGAGGTGTCATGGA
LOC_Os03g52860
Os.53604.1.S1_at--670--91Chr03:30269457..30269481 (25 bp)
ATTCGTTGTGTAATTTCCCTTTCAG
LOC_Os03g52860
Os.53604.1.S1_at--86--8751Chr03:30269465..30269489 (25 bp)
TGTAATTTCCCTTTCAGTTCCTAAT
LOC_Os03g52860
Target Sequence 
AGAAGGTGTTCGTCCGGACAATCACCAAGCAGATGCAGGCCATCGTGGGGATCTCGCTGCTGGAGATCCTGTCCAAGCAC
TCCTCCGACGAGGTGTACCTCGGACAGNGCGACACGCCGGAGTGGACGTCGGACGCCAAGGCGCTGGAGGCGTTCAAGCG
GTTCGGCGCGCGGCTGACGGAGATCGAGAGCCGNGTCGTCGCCATGAACAANGACCCCCACCGCAANNACCGTGTCGGGC
CGACCAATTTCCCCTACACGCTGCTCTACCCAAACACCTCCGACCTCAAGGGCGACGCTGCCGGCCTCTCCGCCAGGGGC
ATCCCCAACAGCATCTCCATCTGATCTCCATCTCATCAGATGAGGCTGCTCCACGGAGGCGCCAGCGTGGACAAGAGTAG
TTTTACGGTGGTCTTTACCGGTAGTATTTTACTTTCAATAATTGCCATGACACCTACACCCGGAGGTGTCATGGAGGATG
AATTCGTTGTGTAATTTCCCTTTCAGTTCCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis