Browse Element(s) Details


Os.53605.1.S1_at

Description gb:AK073530.1
DB_XREF= gi:32983553
TID=Os.53605.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046M10, full insert sequence.
FL= gb:AK073530.1 gb:AK101541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g377902/11hypothetical protein
LOC_Os10g351602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37720NANA6+22337743..22343829retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37730NANA6+22344146..22347086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37740OsAffx.15804.1.S1_at11/116+22348654..22349127hypothetical protein
LOC_Os06g37750Os.49844.1.S1_at9/116+22351090..22353760D-mannose binding lectin family protein, expressed
LOC_Os06g37760OsAffx.30677.3.S1_x_at11/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37760OsAffx.30677.4.S1_x_at7/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37770NANA6+22360236..22360676hypothetical protein
LOC_Os06g37780OsAffx.17964.1.S1_x_at1/116+22361324..22361713hypothetical protein
LOC_Os06g37790OsAffx.30677.1.S1_x_at5/116+22363636..22366815hypothetical protein
LOC_Os06g37790OsAffx.30677.5.S1_x_at4/116+22363636..22366815hypothetical protein
LOC_Os06g37790Os.53605.1.S1_at2/116+22363636..22366815hypothetical protein
LOC_Os06g37800OsAffx.5037.1.S1_at9/116+22369943..22370245hypothetical protein
LOC_Os06g37810OsAffx.15805.1.S1_at11/116+22374264..22374920resistance protein, putative
LOC_Os06g37820OsAffx.15806.1.S1_at11/116+22375669..22386249Leucine Rich Repeat family protein
LOC_Os06g37830OsAffx.30016.1.S1_at1/116+22387370..22389896transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53605.1.S1_at--366--6718Chr01:20193967..20193991 (25 bp)
GTTCCCTGTGTTGGATTTGGCACTG
NONE
Os.53605.1.S1_at--84--65311Chr08:22866039..22866059 (21 bp)
GATTTGGCACTGCTATTTCTGAAAT
NONE
Os.53605.1.S1_at--527--7152Chr12:24993464..24993488 (25 bp)
GTGGGTCTCTAACACCTTCTTTGGG
NONE
Os.53605.1.S1_at--946--7971Chr12:24993430..24993454 (25 bp)
GGATCCATCTGCCTTTGTGTCAACA
NONE
Os.53605.1.S1_at--68--2851Chr12:24993389..24993413 (25 bp)
AAGTACAATGTTTCCCCTTCTCGAT
NONE
Os.53605.1.S1_at--1014--2571Chr12:24993355..24993379 (25 bp)
AACGGATGCGACATGTTTACCACAT
NONE
Os.53605.1.S1_at--650--6811Chr12:24993341..24993365 (25 bp)
GTTTACCACATCCATTCCAGGTGAA
NONE
Os.53605.1.S1_at--1157--1031Chr12:24993323..24993347 (25 bp)
AGGTGAACTTGCCACATTTGCTGCA
NONE
Os.53605.1.S1_at--364--211Chr12:24993308..24993332 (25 bp)
ATTTGCTGCATTCCACCTTGAAGCA
NONE
Os.53605.1.S1_at--87--291Chr12:24993211..24993235 (25 bp)
ATAGGTTCCTCTGGTCTTCATGGAT
NONE
Os.53605.1.S1_at--163--10071Chr12:24993108..24993132 (25 bp)
TAGTCTTTGACTCTTTGGTGATGGA
NONE
Target Sequence 
GTTCCCTGTGTTGGATTTGGCACTGCTATTTCTGAAATTACATTGTTGAGTGGGTCTCTAACACCTTCTTTGGGGTTCGA
AGTGGATCCATCTGCCTTTGTGTCAACACCCGGCCATGGCTTGCAAGTACAATGTTTCCCCTTCTCGATACCGTCGTAAA
CGGATGCGACATGTTTACCACATCCATTCCAGGTGAACTTGCCACATTTGCTGCATTCCACCTTGAAGCACATCCTGTGC
TCTTCTTCAGGTGCTCCTTTGGTGCGTGGTGGGCAGTGGCAAATGTTGGGATGTTCTTTTGGATAGGTTCCTCTGGTCTT
CATGGATTTCAGCATTTTATAGCATCATATGCTGTTCTTCTTCTGAAGGAACAATGTACAAATACCCTATATATGCTGTT
CAATGTAGTCTTTGACTCTTTGGTGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis