Browse Element(s) Details


Os.53619.1.S1_at

Description gb:AK073599.1
DB_XREF= gi:32983622
TID=Os.53619.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050J23, full insert sequence.
FL= gb:AK104190.1 gb:AK104012.1 gb:AK073599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7330011/11VAMP-like protein YKT62, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73240OsAffx.9740.1.S1_at11/111+42783687..42784325expressed protein
LOC_Os01g73240OsAffx.9740.1.S1_s_at11/111+42783687..42784325expressed protein
LOC_Os01g73250OsAffx.11838.1.S1_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250Os.22580.1.S1_s_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250OsAffx.11838.1.S1_x_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73260OsAffx.24026.1.S1_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73260OsAffx.24026.1.S1_x_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73270Os.31324.1.S1_at3/111+42797175..42798698expressed protein
LOC_Os01g73280NANA1+42799457..42800918hypothetical protein
LOC_Os01g73290OsAffx.13272.1.S1_at1/111+42801517..42802219hypothetical protein
LOC_Os01g73300Os.53619.1.S1_at11/111+42806540..42810187VAMP-like protein YKT62, putative, expressed
LOC_Os01g73310Os.18675.1.S1_at11/111+42810921..42814292Actin-1, putative, expressed
LOC_Os01g73320OsAffx.22848.4.S1_at2/111+42824703..42830661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73320OsAffx.22848.3.S1_x_at1/111+42824703..42830661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73320OsAffx.22848.4.S1_x_at1/111+42824703..42830661retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006944biological_processmembrane fusion
GO:0046909biological_processintermembrane transport
GO:0005774cellular_componentvacuolar membrane
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53619.1.S1_at--477--2391Chr01:42809130..42809154 (25 bp)
AAAACTGATAACACCCAGCCTTGGC
LOC_Os01g73300
Os.53619.1.S1_at--580--5191Chr01:42809107..42809131 (25 bp)
GCAATACCTGGATGATGCCTTGACA
LOC_Os01g73300
Os.53619.1.S1_at--1119--5831Chr01:42807325..42807349 (25 bp)
GACCATCGATAGTGTACTTTCTAGA
LOC_Os01g73300
Os.53619.1.S1_at--1080--6051Chr01:42806758..42806782 (25 bp)
GAGTTCTGCAGTAGCACACTATGTT
LOC_Os01g73300
Os.53619.1.S1_at--423--8291Chr01:42806733..42806757 (25 bp)
GGCATTTTCTTTGCTGCAAGTCTGC
LOC_Os01g73300
Os.53619.1.S1_at--635--9771Chr01:42806705..42806729 (25 bp)
TAATGTCATAGCATCCTGGTGTCCG
LOC_Os01g73300
Os.53619.1.S1_at--586--9271Chr01:42806692..42806716 (25 bp)
TCCTGGTGTCCGAGGTGTTAAACAA
LOC_Os01g73300
Os.53619.1.S1_at--435--9991Chr01:42806664..42806688 (25 bp)
TAGCGGTTAACATATGCCACAGGGC
LOC_Os01g73300
Os.53619.1.S1_at--769--10771Chr01:42806596..42806620 (25 bp)
TTGAGATGATCTGTGCCTGGTACTG
LOC_Os01g73300
Os.53619.1.S1_at--538--7291Chr01:42806584..42806608 (25 bp)
GTGCCTGGTACTGTGTCAAAGCTAT
LOC_Os01g73300
Os.53619.1.S1_at--20--5611Chr01:42806549..42806573 (25 bp)
GAAATTGTGTACTGTCATCTTGACC
LOC_Os01g73300
Target Sequence 
AAAACTGATAACACCCAGCCTTGGCAATACCTGGATGATGCCTTGACAAAATACCAGGATCCTGCAGAGGCTGACAAGTT
GCTGAAAATTCAGAGGGATTTGGATGAAACTAAGATTATTCTTCACAAGACCATCGATAGTGTACTTTCTAGAGGTGAAA
GATTGGATAGCCTAGTGGAGAAGAGTTCAGATCTAAGTGCTGCTTCACAGATGTTCTACAAGCAGGCCAAGAAAACCAAC
TCTTGTTGTACAATCCTGTAATAGAAACTCTGGTATAGAGTTCTGCAGTAGCACACTATGTTGGCATTTTCTTTGCTGCA
AGTCTGCGATTAATGTCATAGCATCCTGGTGTCCGAGGTGTTAAACAAAGTTAGCGGTTAACATATGCCACAGGGCTACC
CTACGTAATTTTTTGTAAGTAACACAAGTGTGGTTGCCATTGAGATGATCTGTGCCTGGTACTGTGTCAAAGCTATAATT
AGTGATGAAATTGTGTACTGTCATCTTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis