Browse Element(s) Details


Os.53646.1.S1_at

Description gb:AK073733.1
DB_XREF= gi:32983756
TID=Os.53646.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033059B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033059B18, full insert sequence.
FL= gb:AK073733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7122010/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71170OsAffx.11813.1.S1_at11/111+41506282..41507216expressed protein
LOC_Os01g71180OsAffx.23997.1.S1_at11/111+41510649..41513399PPR986-12, putative
LOC_Os01g71190Os.25590.1.S1_at11/111+41513875..41515630Photosystem II reaction center W protein, putative, expressed
LOC_Os01g71200Os.33686.1.S1_at11/111+41520199..41525752Ribonucleoprotein, putative, expressed
LOC_Os01g71210Os.51276.1.S1_x_at11/111+41528408..41529133expressed protein
LOC_Os01g71220Os.53646.1.S1_at10/111+41530698..41535561hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os01g71230Os.12071.1.S1_at11/111+41541160..41543918Nascent polypeptide-associated complex alpha subunit-like protein 3, putative, expressed
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed
LOC_Os01g71250Os.28979.2.S1_x_at11/111+41554233..41556655expressed protein
LOC_Os01g71250Os.28979.1.S1_at11/111+41554233..41556655expressed protein
LOC_Os01g71256Os.33291.1.S1_a_at10/111+41557703..41562435expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53646.1.S1_at--637--371NONE
ATCAAACGCTACTCGGAGCCTGTGG
NONE
Os.53646.1.S1_at--100--8371Chr01:41531214..41531238 (25 bp)
GGCGTTCCATTCATTGGGCCAACAT
LOC_Os01g71220
Os.53646.1.S1_at--1057--31Chr01:41531191..41531215 (25 bp)
ATTGTGCCTCTTGTGTGTATTCTAA
LOC_Os01g71220
Os.53646.1.S1_at--392--1771Chr01:41531091..41531115 (25 bp)
ACCTGTTCTTCTTGTCTGGCTGTAG
LOC_Os01g71220
Os.53646.1.S1_at--1081--8351Chr01:41531044..41531068 (25 bp)
GGCGGGCAAGCACAATACAGCGTCC
LOC_Os01g71220
Os.53646.1.S1_at--733--3931Chr01:41531009..41531033 (25 bp)
CGGCGTGCTGTTATACTTCTTGTTA
LOC_Os01g71220
Os.53646.1.S1_at--778--9171Chr01:41530922..41530946 (25 bp)
TGCCTAGGTCAAAGCCACGGTGGTG
LOC_Os01g71220
Os.53646.1.S1_at--807--4991Chr01:41530897..41530921 (25 bp)
GCAGGCCCTTGTCTAGCACTTGTTG
LOC_Os01g71220
Os.53646.1.S1_at--1040--10671Chr01:41530875..41530899 (25 bp)
TTGCCCGGGTTTTGCTATGTACTAC
LOC_Os01g71220
Os.53646.1.S1_at--608--10211Chr01:41530755..41530779 (25 bp)
TATTTTGGGACTATGCTCTGGAGCA
LOC_Os01g71220
Os.53646.1.S1_at--710--8071Chr01:41530736..41530760 (25 bp)
GGAGCATCTGTCTTGTTGAACCTAT
LOC_Os01g71220
Target Sequence 
ATCAAACGCTACTCGGAGCCTGTGGCGTTCCATTCATTGGGCCAACATTGTGCCTCTTGTGTGTATTCTAATGAGCCTAC
TATGACGAAGAAACACGCGGCTAGACAGATGTAAATTAGGGAGGTTTCAAGAGGTGATGAGGCACCACCTGTTCTTCTTG
TCTGGCTGTAGCCGGCCGATCAGCTCCCGGGCCGGCGGGCAAGCACAATACAGCGTCCCACACGGCCTCGGCGTGCTGTT
ATACTTCTTGTTAGTGCATGTAAATATGGATGGGGGGGGGGGGGGNTGGGGTATAAGGCAAATGGGCAGCAGCTGTGCCT
AGGTCAAAGCCACGGTGGTGGCAGGCCCTTGTCTAGCACTTGTTGCCCGGGTTTTGCTATGTACTACTGCTGTTGAGAAG
AGGATCTTCAAGTGTAAAAACCACTTCTTTTTTCTTTTTAATATGAGAGGGGCATAGAATCTACNTCCAATTTTCAGAGG
TCTATTTTGGGACTATGCTCTGGAGCATCTGTCTTGTTGAACCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis